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Table 3 Scores and E-values for the alignment of 18 representative MT domains with the HMM profiles of N-MT, O-MT and C-MT.

From: In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites

 

NMT

OMT

CMT

 

Score

E-value

Score

E-value

Score

E-value

actin01_NM_001

390.1

1.10E-117

-

-

-

-

anaba01_NM_001

252.8

2.40E-076

-

-

-

-

anaba01_OM_001

-

-

375.5

2.80E-113

-

-

barba01_OM_001

-

-

385.5

2.80E-116

-

-

bleom01_CM_001

-

-

-54.3

4.70E-007

385.5

2.80E-116

compa01_CM_001

-

-

-

-

332.7

2.10E-100

cyclo01_NM_001

449.7

1.30E-135

-

-

-

-

eryth01_OM_001

-

-

369.6

1.60E-111

-

-

leina01_CM_001

-

-

-5.7

2.20E-010

395.5

2.60E-119

melit01_OM_001

-

-

178.7

4.80E-054

-

-

nodul02_CM_001

-

-

  

270.3

1.30E-081

onnam01_OM_001

-

-

289.7

1.80E-087

280.1

1.50E-084

onnam04_OM_001

-

-

378.1

4.60E-114

-

-

peder01_OM_001

-

-

234.7

6.90E-071

-

-

pyoch01_NM_001

187.4

1.10E-056

-

 

17.1

3.30E-013

stigm03_OM_001

-

-

210.1

1.70E-063

-

-

thaxt02_NM_001

318.9

3.10E-096

-

-

-

-

yersi01_CM_002

-

-

-

-

321.4

5.20E-097

  1. A '-'sign indicates that alignments resulted in scores with E-value higher than 1.0E-6. Several C-MTs align with O-MT profiles, while only N-MT of pyochelin synthase shows alignment with C-MT profile as well.
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BMC Bioinformatics

ISSN: 1471-2105

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