Figure 2
From: CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
An overall summary of the CompMoby software data analysis and algorithm design. Reference refers to upstream or 3' UTR sequences from the same species of the set of co-regulated genes. Orthologous refers to sequences from genes orthologous to the reference species. Aligned blocks are the upstream or 3' UTR conserved sequences derived from a genome-wide pair-wise alignment (obtainable from the UCSC genome browser) between the species used in the reference and orthologous sequences.