Table 1 Cao et al 2006 top ChIP-on-chip predictions with CORE_TF
A. MyoD ChIP-on-chip | |||||||
|---|---|---|---|---|---|---|---|
C2C12 MyoD FAST | p-val* | C2C12 MyoD %GC | p-val* | MDER MyoD FAST | p-val* | MDER MyoD %GC | p-val* |
AP1_Q6_01 | 0 | MYOGENIN_Q6 | 1.5E-06 | AP1_Q6_01 | 0 | AP4_Q5 | 0 |
E2F1DP1_01 | 0 | AP4_Q5 | 2.3E-06 | AP4_Q5 | 0 | AP4_Q6 | 3.1E-06 |
E2F4DP2_01 | 0 | E2A_Q2 | 2.7E-06 | COUP_DR1_Q6 | 0 | MYOGENIN_Q6 | 2.7E-05 |
E2F_Q4 | 0 | AP4_Q6 | 8.8E-06 | E2F1DP1_01 | 0 | AP4_Q6_01 | 2.7E-04 |
E2F_Q6_01 | 0 | MYOD_Q6 | 8.8E-06 | E2F4DP2_01 | 0 | AP4_01 | 1.2E-03 |
GATA3_01 | 0 | AP4_Q6_01 | 5.1E-05 | E2F_Q4 | 0 | MYOD_Q6 | 4.5E-03 |
MAF_Q6_01 | 0 | E47_01 | 1.1E-03 | E2F_Q6_01 | 0 | E2A_Q2 | 5.2E-03 |
NF1_Q6_01 | 0 | E12_Q6 | 1.4E-03 | MAF_Q6_01 | 0 | LBP1_Q6 | 2.3E-02 |
NFE2_01 | 0 | LBP1_Q6 | 4.0E-03 | NF1_Q6_01 | 0 | HEN1_02 | 7.6E-02 |
OSF2_Q6 | 0 | E2A_Q6 | 4.6E-03 | NFE2_01 | 0 | TAL1BETAE47_01 | 7.6E-02 |
AP4_Q5 | 7.9E-09 | SMAD_Q6_01 | 2.7E-02 | NFKB_Q6 | 0 | MYOD_Q6_01 | 1.7E-01 |
MYOGENIN_Q6 | 7.9E-09 | MYOD_Q6_01 | 4.4E-02 | OSF2_Q6 | 0 | HEB_Q6 | 2.9E-01 |
LBP1_Q6 | 2.2E-08 | AP1FJ_Q2 | 4.5E-02 | AP4_Q6 | 3.5E-09 | HELIOSA_01 | 2.9E-01 |
AP4_Q6 | 5.8E-08 | AP1_Q4 | 5.8E-02 | GATA3_01 | 3.5E-09 | AP1_Q4 | 4.0E-01 |
AP4_Q6_01 | 6.2E-08 | E47_02 | 9.4E-02 | LBP1_Q6 | 6.5E-08 | HNF4_01 | 4.0E-01 |
B. Myog ChIP-on-chip | |||||||
C2C12 Myog FAST | p-val* | C2C12 Myog %GC | p-val* | MDER Myog FAST | p-val* | MDER Myog %GC | p-val* |
AP1_Q6_01 | 0 | AP4_Q5 | 0 | AP1_Q6_01 | 0 | AP4_Q5 | 0 |
AP4_Q5 | 0 | AP4_Q6 | 0 | AP4_Q5 | 0 | AP4_Q6 | 0 |
AP4_Q6 | 0 | MYOGENIN_Q6 | 0 | AP4_Q6 | 0 | MYOGENIN_Q6 | 0 |
E2F1DP1_01 | 0 | MYOD_Q6 | 5.0E-06 | COUP_DR1_Q6 | 0 | AP4_Q6_01 | 2.5E-06 |
MAF_Q6_01 | 0 | AP4_Q6_01 | 1.1E-05 | E2F1DP1_01 | 0 | LBP1_Q6 | 8.0E-06 |
MYOGENIN_Q6 | 0 | E2A_Q2 | 9.0E-04 | E2F4DP2_01 | 0 | MYOD_Q6 | 8.1E-06 |
NF1_Q6_01 | 0 | AREB6_01 | 6.9E-03 | E2F_Q4 | 0 | E2A_Q2 | 7.1E-03 |
NFE2_01 | 0 | MYOD_Q6_01 | 1.4E-02 | E2F_Q6_01 | 0 | MYOD_Q6_01 | 8.6E-03 |
OSF2_Q6 | 0 | LBP1_Q6 | 1.4E-02 | LBP1_Q6 | 0 | CLOCKBMAL_Q6 | 4.5E-02 |
E2F4DP2_01 | 4.7E-09 | AP4_01 | 1.9E-02 | MAF_Q6_01 | 0 | AP2ALPHA_01 | 5.7E-02 |
COUP_DR1_Q6 | 1.6E-07 | AP1_Q4 | 2.2E-02 | MYOGENIN_Q6 | 0 | ZEC_01 | 5.8E-02 |
AP4_Q6_01 | 2.3E-07 | ZEC_01 | 2.2E-02 | NF1_Q6_01 | 0 | AP2_Q6 | 7.7E-02 |
E2F_Q4 | 1.3E-06 | E2A_Q6 | 7.1E-02 | NFE2_01 | 0 | AP4_01 | 1.1E-01 |
GATA3_01 | 6.5E-06 | ATF6_01 | 8.0E-02 | OSF2_Q6 | 0 | PPARG_01 | 1.2E-01 |
MYOD_Q6 | 7.5E-06 | E47_01 | 8.2E-02 | AP4_Q6_01 | 6.4E-09 | CMYC_02 | 1.2E-01 |