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Figure 3 | BMC Bioinformatics

Figure 3

From: Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions

Figure 3

Comparison between estimated and true r2. Estimated versus true r2 values for diploids, triploids, and tetraploids, respectively for all pairs of markers separated by < 500 Kb. The estimated r2 in A-C is calculated from haplotypes inferred using the same polyHap runs (with eight clusters and 1 repetition) as in Figure 2, while in D-F is calculated from haplotypes inferred using fastPhase (with 20 clusters and 10 repetitions) by treating the polyploid genotypes as diploid. The Pearson correlation coefficients between estimated and true r2 for A-F are 0.999, 0.997, 0.996, 0.998, 0.975 and 0.840 respectively.

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BMC Bioinformatics

ISSN: 1471-2105

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