Figure 4

Results display for a pairwise analysis. The output display for a pairwise analysis consists of a data table. The following variables are displayed: dataset name, likelihood score, tree length, κ (the transition-to-transversion rate ratio), ω(d_N/d_S), d_Nand d_S. Columns can be sorted (see ω) and the distribution of parameters across datasets visualized with a histogram. Genes with ω > 1 are displayed in red. The histogram indicates a modal d_Svalue of ~0.5 (i.e., differences in ~50% of all synonymous sites) between the two Plasmodium species analyzed (see Results).