Compo: composite motif discovery using discrete models

BMC Bioinformatics

Table 3 Results on muscle and liver data sets

Method	Muscle	Liver
Compo, independent sequence runs	0.47	0.56
Compo, support and allowing non-perfect matches	0.42	0.57
Compo, support and standard set-model	0.37	0.55
CMA	0.46	0.36
ModuleSearcher	0.46	0.43
Stubb	0.24	0.48
MSCAN	0.50	0.51
MCAST	0.30	0.50
Cister	0.36	0.31
Cluster-Buster	0.41	0.59

Prediction performance on the muscle and liver data sets. Score values equal to or better than main Compo run are shown in bold.

ISSN: 1471-2105