From: Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
Average of pairs with best TM-score from Fr-TM-align (200 proteins for each dataset)a | |||||||
---|---|---|---|---|---|---|---|
⟨cRMSDM⟩ | ⟨cR(core)M⟩ | ⟨TMM⟩ | ⟨PSIM %⟩ | ⟨rPSIM %⟩ | ⟨LM⟩ | ⟨covM %⟩ | |
Dataset 1 | |||||||
CE | 4.5 (1.5) | 2.5 (0.4) | 0.392 (0.207) | 39.1 (26.6) | 29.3 (26.6) | 120.9 | 59.2 |
TM-align | 4.6 (1.7) | 2.3 (0.4) | 0.488 (0.163) | 46.5 (24.5) | 37.1 (27.2) | 162.5 | 70.4 |
Fr-TM-align | 4.5 (1.6) | 2.3 (0.4) | 0.522 (0.144) | 50.0 (23.4) | 40.4 (26.5) | 170.6 | 74.5 |
Dataset 2 | |||||||
CE | 4.8 (1.5) | 2.6 (0.4) | 0.354 (0.175) | 35.8 (24.2) | 25.7 (24.1) | 108.5 | 58.0 |
TM-align | 4.7 (1.5) | 2.3 (0.4) | 0.451 (0.142) | 43.9 (21.6) | 34.1 (23.3) | 139.3 | 67.5 |
Fr-TM-align | 4.5 (1.5) | 2.3 (0.4) | 0.497 (0.127) | 49.2 (22.0) | 39.1 (24.4) | 149.1 | 73.2 |