Table 6 RE BLOSUM 62 matrix for alphabet Σ20 × Σ2
From: Optimal neighborhood indexing for protein similarity search
C | F | Y | W | M | L | I | V | G | P | A | T | S | N | H | Q | E | D | R | K | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[CF Y W M LIV ] | 4 | 4 | 3 | 4 | 3 | 4 | 4 | 3 | -6 | -6 | -2 | -2 | -4 | -6 | -4 | -4 | -6 | -7 | -5 | -5 |
[GP AT SN HQEDRK] | -4 | -5 | -4 | -6 | -3 | -5 | -5 | -4 | 2 | 2 | 1 | 1 | 2 | 2 | 1 | 2 | 2 | 2 | 2 | 2 |