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Table 6 RE BLOSUM 62 matrix for alphabet Σ20 × Σ2

From: Optimal neighborhood indexing for protein similarity search

  C F Y W M L I V G P A T S N H Q E D R K
[CF Y W M LIV ] 4 4 3 4 3 4 4 3 -6 -6 -2 -2 -4 -6 -4 -4 -6 -7 -5 -5
[GP AT SN HQEDRK] -4 -5 -4 -6 -3 -5 -5 -4 2 2 1 1 2 2 1 2 2 2 2 2
  1. RE BLOSUM 62 matrix for alphabet Σ20 × Σ2. Scores located on the "diagonal" are shown in bold.