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Table 6 Epitope prediction of the test case 1e6j (chain: P) based on motif mapping : motif sequence taken from Mimox is [DE]V [FM]GPL [STDE]TX-X [DE]; native epitope recorded in CED (id: CE0170) is ALGPAATEE (204–210, 212, 213) TA (216–217); parameters of Pep-3D-Search are similarity mode and AHA (distance threshold = 4).

From: Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis

No. Residues and Locations of Candidate Score
1* D197 I201 L205 G206 P207 A209 E213 T216 M215 R162 D163 D166 2.1385
2* D197 I201 L205 G206 P207 A209 E213 T210 L211 Y169 R167 D166 2.1385
3* D197 I201 L205 G206 P207 A209 E213 T216 E212 M215 R162 D163 2.1385
4* D197 I201 K203 G206 P207 A209 E213 T216 E212 L211 Y169 D166 2.1385
5* D197 I201 K203 G206 P207 A209 E213 T210 M214 M215 R162 D166 2.1385
6* D197 I201 L205 G206 P207 A208 A209 T210 L211 Y169 V165 D163 2.1385
7* D197 I201 L205 G206 P207 A208 A209 T210 E213 L211 Y169 D166 2.1385
8* D197 I201 L205 G206 P207 A209 E213 T210 M214 A217 T216 E212 2.1385
9* D197 I201 L205 G206 P207 A209 E213 T216 A217 Q219 M215 E212 2.1385
10* D197 I201 L205 G206 P207 A209 E213 T210 E212 M214 V191 E187 2.1385