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Table 4 Hapmap trio datasets results

From: Shape-IT: new rapid and accurate algorithm for haplotype inference

Datasets Shape-IT Phase v2.1 Fastphase Ishape 2snp Gerbil PLEM
  SER Time SER Time SER Time SER Time SER Time SER Time SER Time
CEU Size 1.1   1.1   1.5   1.1   2.2   2.3   2.0  
   53   832   113   93   < 1   50   10
YRI Size 1.7   1.7   2.3   1.8   4.5   3.9   4.2  
   64   1,209   125   138   < 1   131   10
CEU Density 2.3   2.3   2.7   2.4   4.2   4.0   4.1  
   26   214   64   43   < 1   5   6
YRI Density 3.7   3.7   4.9   3.9   8.5   7.5   8.8  
   35   490   71   80   < 1   9   5
CEU MAF 1.1   1.1   1.2   1.2   2.0   2.1   1.7  
   19   104   71   22   < 1   2   4
YRI MAF 1.5   1.5   2.0   1.5   4.5   3.8   3.2  
   26   173   80   38   < 1   4   4
CEU 50 illumina SNP 6.3   6.3   7.2   6.6   10.7   9.2   12.2  
   51   1,214   60   161   < 1   22   5
CEU 100 illumina SNP 6.7   6.8   7.7   9.2   11.3   9.7   N/A  
   143   11,678   144   461   < 1   254   N/A
CEU 200 illumina SNP 7.2   N/A   8.0   N/A   11.5   9.9   N/A  
   372   N/A   198   N/A   < 1   2,038   N/A
  1. N/A: software was unable to handle some of these datasets (errors or untracktable running times). Results of the various tested software on the HapMap trios datasets described in Table 1. For each software tested, the mean percentage of heterozygous markers incorrectly inferred (SER) is shown in the upper-left corner, and the mean running time in seconds is shown in the lower-right corner.