Table 2 The nGASP test and training genomic regions.
From: nGASP – the nematode genome annotation assessment project
Type of nGASP region | Criterion used for selecting region | Coordinates in the C. elegans WS160 genome |
|---|---|---|
Training | High conservation, high gene density, autosomal | II: 2000001–3000000 |
Training | High conservation, high gene density, autosomal | V: 9000001–10000000 |
Training | High conservation, low gene density, autosomal | III: 1000001–2000000 |
Training | High conservation, low gene density, autosomal | IV: 2000001–3000000 |
Training | Low conservation, high gene density, autosomal | I: 12000001–13000000 |
Training | Low conservation, high gene density, autosomal | V: 4000001–5000000 |
Training | Low conservation, low gene density, autosomal | I: 2000001–3000000 |
Training | Low conservation, low gene density, autosomal | II: 13000001–14000000 |
Training | High conservation, low gene density, X-chromosome | X: 3000001–4000000 |
Training | High conservation, low gene density, X-chromosome | X: 2000001–3000000 |
Test | High conservation, high gene density, autosomal | IV: 7000001–8000000 |
Test | High conservation, high gene density, autosomal | V: 12000001–13000000 |
Test | High conservation, low gene density, autosomal | IV: 1–1000000 |
Test | High conservation, low gene density, autosomal | I: 14000001–15000000 |
Test | Low conservation, high gene density, autosomal | V: 16000001–17000000 |
Test | Low conservation, high gene density, autosomal | II: 1–1000000 |
Test | Low conservation, low gene density, autosomal | IV: 14000001–15000000 |
Test | Low conservation, low gene density, autosomal | I: 1000001–2000000 |
Test | High conservation, low gene density, X-chromosome | X: 4000001–5000000 |
Test | High conservation, low gene density, X-chromosome | X: 8000001–9000000 |