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Table 1 Composition of side-chain environment class

From: Prediction of protein-protein binding site by using core interface residue and support vector machine

Core cut-off Residue class E P1 P2 B1 B2 B3
0.2 Core interface 75.2% 18.7% 3.8% 1.9% 0% 0.3%
  Rim interface 53.2% 30.1% 8.2% 7.8% 0.1% 0.6%
  Non-interface 65.5% 22.0% 5.6% 4.9% 0.1% 0.5%
0.8 Core interface 93.4% 5.4% 0.6% 0% 0% 0%
  Rim interface 67.9% 22.9% 5.2% 3.5% 0% 0.4%
  Non-interface 65.5% 23.5% 5.6% 4.9% 0.1% 0.5%
  1. This table shows the composition of residues in each side-chain environment class. The first column is the value of core cut-off. The second column is the name of the three residue class. The third column to the eighth column shows the residue composition of each environment class for each residue class. The sum of the compositions of six classes does not equal to 1 because some of the residues cannot be classified into either of the class due to the loss of accessible surface area data. The classification method of E, P1, P2, B1, B2, and B3 is shown in the Method section.