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Table 6 Prediction results on test set

From: Prediction of protein-protein binding site by using core interface residue and support vector machine

Prediction method

Sensitivity

Specificity

MCC

Lib-SVM

60.7%

41.9%

0.203

ProMate

9.9%

28.1%

0.007

PINUP

21.2%

39.5%

0.096

PPISP

27.7%

44.2%

0.146

  1. This table shows the prediction results of different method on the test set. The first column is the method used for site prediction. The second, third, and fourth columns are average sensitivity, specificity, and MCC over all proteins in the test set. All the statistics are perform according to the classification method which classifies residues into interface and non-interface classes.
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BMC Bioinformatics

ISSN: 1471-2105

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