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Table 2 HLA Class II haplotype (2 loci) frequencies above 0.01 determined by direct counting and computational methods (n = 61 individuals)

From: Evaluation of two methods for computational HLA haplotypes inference using a real dataset

  Correct Haplotypes   Haplotype Frequency  
   Real Arlequin V3.0 PHASE v2.1.1
1 DQB1*03-DRB1*04 0.164 0.164 0.163
2 DQB1*02-DRB1*07 0.148 0.148 0.146
3 DQB1*05-DRB1*01 0.139 0.139 0.139
4 DQB1*03-DRB1*11 0.123 0.123 0.122
5 DQB1*06-DRB1*15 0.074 0.074 0.074
6 DQB1*06-DRB1*13 0.074 0.073 0.072
7 DQB1*02-DRB1*03 0.074 0.074 0.073
8 DQB1*04-DRB1*08 0.041 0.041 0.041
9 DQB1*05-DRB1*15 0.025 0.025 0.025
10 DQB1*03-DRB1*13 0.025 0.033 0.031
11 DQB1*05-DRB1*10 0.025 0.025 0.024
12 DQB1*05-DRB1*14 0.016 0.016 0.014
13 DQB1*02-DRB1*13 0.016 0.008 0.010
14 DQB1*03-DRB1*12 0.016 0.016 0.016
15 DQB1*03-DRB1*09 0.016 0.016 0.016
   I F 0.992 0.989
   I H 1.000 1.000
   MSE 7.3E-06 5.2E-06