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Table 3 HLA Class I haplotype (3 loci) frequencies above 0.01 determined by direct counting and computational methods (n = 61 individuals)

From: Evaluation of two methods for computational HLA haplotypes inference using a real dataset

  Correct Haplotypes   Haplotype Frequency  
   Real Arlequin V3.0 PHASE v2.1.1
1 A*24-B*27-Cw*02 0.074 0.096 0.053
2 A*02-B*27-Cw*01 0.049 0.074 0.039
3 A*02-B*27-Cw*02 0.033 0.034 0.031
4 A*03-B*27-Cw*02 0.033 0.041 0.040
5 A*03-B*35-Cw*04 0.033 0.041 0.033
6 A*02-B*15-Cw*02 0.025 0.010 0.024
7 A*11-B*35-Cw*04 0.025 0.033 -
8 A*24-B*27-Cw*01 0.025 0.018 0.018
9 A*26-B*27-Cw*02 0.025 0.016 0.024
10 A*29-B*44-Cw*16 0.025 0.025 0.024
11 A*01-B*37-Cw*06 0.016 0.016 0.016
12 A*02-B*07-Cw*07 0.016 0.032 0.025
13 A*02-B*27-Cw*06 0.016 0.016 0.016
14 A*02-B*44-Cw*05 0.016 0.008 0.010
15 A*03-B*07-Cw*07 0.016 - 0.016
16 A*11-B*27-Cw*01 0.016 - 0.007
17 A*23-B*44-Cw*04 0.016 0.016 0.016
18 A*24-B*07-Cw*07 0.016 0.009 -
19 A*26-B*52-Cw*12 0.016 0.016 0.016
20 A*30-B*35-Cw*06 0.016 0.016 0.016
21 A*32-B*27-Cw*01 0.016 - 0.016
   I F 0.906 0.944
   I H 0.923 0.950
   MSE 3.7E-05 2.2E-05
  Incorrect Haplotypes    
1 A*11-B*14-Cw*08   0.008 0.015
2 A*32-B*27-Cw*07   0.016 -
3 A*02-B*18-Cw*01   - 0.011
4 A*29-B*27-Cw*02   - 0.017