Figure 5
From: Towards an automatic classification of protein structural domains based on structural similarity
Matrices of pairwise distances among domains of folds c.58 and c.78. Pairwise distances between domains were obtained from the pairwise similarity scores number of matched residues, according to Eq(1) and symmetrized as specified in Methods. The yellow color corresponds to pairwise distances smaller than141, 119 and 88 for VAST matrix (a), SHEBA matrix (b) and DALI matrix(c) respectively. The white color corresponds to pairwise distances higher than 141, 129 and 88 for (a), (b) and (c) respectively.