Figure 4

Comparison of unique GO terms found using gene signatures versus those found using semi-supervized clustering (SSC) for the Spellman and Gasch datasets. For the semi-supervized clustering (SSC), the landmark genes were considered as 'must-link' constraints. SSC1 denotes the number of unique GO terms found by using landmark genes as constraints in SSC. GSM1 denotes the number of unique GO terms found by using the gene signature model. SSC2 denotes the number of unique GO terms found for SSC if we remove the largest cluster (containing all the landmark genes) from analysis. GSM2 denotes the number of unique GO terms found using the gene signature model if we remove the largest cluster from analysis. The results for other landmarks are shown in Figure 3 in Additional File 2.