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Table 1 GSM object annotation coverage.

From: Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation

Platform

GSM object number (a)

Labeled objects by ProMiner (b)

Raw data available/ProMiner labeled (c)

Propagated annotation (d)

mouse4302 (GPL1261)

4288

87.2%

3362/2852

145 [90.6%]

mouse430a2 (GPL339)

3521

91.1%

321/288

25 [91.8%]

moe430b (GPL340)

795

97.6%

545/524

14 [99.4%]

mgu74av2 (GPL81)

4676

86.2%

2390/2120

183 [89.5%]

Hgu95av2 (GPL91)

4512

73.5%

1865/1325

221 [78.4%]

  1. We performed our study on a subset of platforms from Affymetrix. (a) Total number of GSM objects present in GEO per platform (November 2007). (b) Percentage of objects labeled by ProMiner. (c) Objects with raw data stored in GEO and number of labeled objects with raw data. (d) Number of propagated annotations and final percentage of labeled objects
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BMC Bioinformatics

ISSN: 1471-2105

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