Table 7 Comparison of the present method and seven state ASA predictors on the Manesh dataset
From: Real value prediction of protein solvent accessibility using enhanced PSSM features
Method\Threshold (%) | 5 | 9 | 10 | 16 | 20 | 25 | 36 | 50 | 60 | 70 | 80 | 90 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Rost and Sander | --1 | 74.6 | -- | 75.0 | -- | -- | -- | -- | -- | -- | -- | -- |
Cuff and Barton | 79.0 | -- | -- | -- | -- | 75.0 | -- | -- | -- | -- | -- | -- |
Manesh et al. | -- | 75.9 | -- | 75.5 | -- | 74.4 | 74.1 | -- | -- | -- | -- | -- |
Ahmad et al. | 74.6 | -- | 71.2 | -- | -- | 70.3 | -- | 75.9 | -- | -- | -- | -- |
Gianese et al. | 75.7 | -- | 73.4 | -- | -- | 71.6 | -- | 76.2 | -- | -- | -- | -- |
Nguyen and Rajapakse | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
(Two-stage SVM)2 | 82.9 | -- | 81.0 | -- | 78.6 | 78.1 | -- | 79.1 | 83.4 | -- | -- | -- |
Nguyen and Rajapakse | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
(Two-stage SVR)3 | 81.1 | 78.7 | 78.5 | 77.9 | 77.6 | 77.3 | 76.9 | 79.5 | 84.3 | 89.9 | 95.0 | 97.5 |
Our method | 80.9 | 80.2 | 80.1 | 79.4 | 78.7 | 78.5 | 78.4 | 80.8 | 85.3 | 90.7 | 95.0 | 97.8 |