From: CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Sequence | SW-Cuda* | SW-Cuda** | Farrar | ||||
---|---|---|---|---|---|---|---|
Name | Length | Time (s) | MCUPS | Time (s) | MCUPS | Time (s) | MCUPS |
P02232 | 143 | 5.59 | 1845 | 2.95 | 3497 | 9 | 1149 |
P01111 | 189 | 7.59 | 1796 | 3.84 | 3551 | 10 | 1367 |
P05013 | 189 | 7.59 | 1796 | 3.84 | 3551 | 10 | 1367 |
P14942 | 222 | 8.84 | 1812 | 4.48 | 3575 | 12 | 1338 |
P00762 | 246 | 9.85 | 1802 | 5.01 | 3542 | 13 | 1369 |
P10318 | 362 | 14.71 | 1775 | 7.57 | 3450 | 15 | 1746 |
P07327 | 374 | 15.28 | 1766 | 7.86 | 3433 | 16 | 1691 |
P01008 | 464 | 18.96 | 1765 | 9.83 | 3405 | 18 | 1864 |
P10635 | 497 | 20.39 | 1758 | 10.43 | 3438 | 19 | 1892 |
P25705 | 553 | 22.83 | 1747 | 11.88 | 3358 | 19 | 2105 |
P03435 | 567 | 23.32 | 1754 | 11.96 | 3420 | 20 | 2045 |