|
family
|
genus
|
sub-genus
|
species
|
total EST
|
nr ESTs
|
gene indices
|
TC
|
sEST
|
total transcripts
|
ESTs mapped
|
TCs mapped
|
|---|
|
Solanaceae
|
Solanum
|
Lycopersicum
|
SOLLC
|
250552
|
190763
|
44759
|
17629
|
28005
|
45634
|
14286
|
975
|
|
Solanaceae
|
Solanum
|
Lycopersicum
|
SOLPN
|
8346
|
6888
|
3863
|
730
|
3140
|
3870
|
488
|
37
|
|
Solanaceae
|
Solanum
|
Lycopersicum
|
SOLHA
|
8000
|
7868
|
4101
|
907
|
3203
|
4110
|
306
|
30
|
|
Solanaceae
|
Solanum
|
Lycopersicum
|
SOLLP
|
1008
|
979
|
744
|
94
|
650
|
744
|
3
|
0
|
|
Solanaceae
|
Solanum
| |
SOLTU
|
226805
|
206696
|
62752
|
19732
|
44138
|
63870
|
5785
|
584
|
|
Solanaceae
|
Solanum
| |
SOLCH
|
7752
|
7750
|
7192
|
306
|
6886
|
7192
|
139
|
10
|
|
Solanaceae
|
Nicotiana
| |
TOBAC
|
74940
|
67745
|
37845
|
7529
|
30578
|
38107
|
403
|
74
|
|
Solanaceae
|
Nicotiana
| |
NICBE
|
27010
|
24784
|
9420
|
3206
|
6315
|
9521
|
95
|
21
|
|
Solanaceae
|
Nicotiana
| |
NICLS
|
12448
|
11749
|
6785
|
958
|
5840
|
6798
|
40
|
6
|
|
Solanaceae
|
Nicotiana
| |
NICSY
|
8580
|
8425
|
7534
|
512
|
7023
|
7535
|
68
|
4
|
|
Solanaceae
|
Nicotiana
| |
NICAT
|
329
|
324
|
312
|
11
|
301
|
312
|
3
|
0
|
|
Solanaceae
|
Capsicum
| |
CAPAN
|
31089
|
28664
|
15703
|
3474
|
12262
|
15736
|
373
|
67
|
|
Solanaceae
|
Capsicum
| |
CAPCH
|
372
|
372
|
343
|
11
|
332
|
343
|
4
|
0
|
|
Solanaceae
|
Petunia
| |
PETHY
|
10670
|
10336
|
7004
|
1166
|
5842
|
7008
|
31
|
4
|
|
Rubiaceae
|
Coffea
| |
COFCA
|
46907
|
38308
|
16121
|
4494
|
11713
|
16207
|
20
|
10
|
|
Rubiaceae
|
Coffea
| |
COFAR
|
1071
|
1059
|
1007
|
42
|
965
|
1007
|
3
|
1
|
- species: SOLLC: Solanum lycopersicum; SOLPN: Solanum pennellii; SOLHA: Solanum habrochaites; SOLLP: S. lycopersicum X S. pimpinellifolium; SOLTU: Solanum tuberosum; SOLCH: Solanum chacoense; TOBAC: Nicotiana tabacum; NICBE: Nicotiana benthamiana; NICLS: Nicotiana langsdorffii x Nicotiana sanderae; NICSY: Nicotiana sylvestris; NICAT: Nicotiana attenuata; PETHY: Petunia x hybrida; CAPAN: Capsicum annuum; CAPCH: Capsicum chinense; COFCA: Coffea canephora; COFAR: Coffea arabica.
- nr EST: non-redundant ESTs. It is the number of EST sequences obtained after the removal of over-represented ESTs from each collection. Gene indices are created by grouping overlapping EST sequences into clusters. Each cluster corresponds to a unique gene. TCs: tentative consensus; TCs are generated from multiple sequence alignments of ESTs (assembling process). sESTs: singleton ESTs. The total transcripts number is obtained adding the TCs to the sESTs. The number of ESTs and TCs which are mapped onto the S. lycopersicum genome is included too.
