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Table 1 Statistics on the EST collections.

From: ISOL@: an Italian SOLAnaceae genomics resource

family genus sub-genus species total EST nr ESTs gene indices TC sEST total transcripts ESTs mapped TCs mapped
Solanaceae Solanum Lycopersicum SOLLC 250552 190763 44759 17629 28005 45634 14286 975
Solanaceae Solanum Lycopersicum SOLPN 8346 6888 3863 730 3140 3870 488 37
Solanaceae Solanum Lycopersicum SOLHA 8000 7868 4101 907 3203 4110 306 30
Solanaceae Solanum Lycopersicum SOLLP 1008 979 744 94 650 744 3 0
Solanaceae Solanum   SOLTU 226805 206696 62752 19732 44138 63870 5785 584
Solanaceae Solanum   SOLCH 7752 7750 7192 306 6886 7192 139 10
Solanaceae Nicotiana   TOBAC 74940 67745 37845 7529 30578 38107 403 74
Solanaceae Nicotiana   NICBE 27010 24784 9420 3206 6315 9521 95 21
Solanaceae Nicotiana   NICLS 12448 11749 6785 958 5840 6798 40 6
Solanaceae Nicotiana   NICSY 8580 8425 7534 512 7023 7535 68 4
Solanaceae Nicotiana   NICAT 329 324 312 11 301 312 3 0
Solanaceae Capsicum   CAPAN 31089 28664 15703 3474 12262 15736 373 67
Solanaceae Capsicum   CAPCH 372 372 343 11 332 343 4 0
Solanaceae Petunia   PETHY 10670 10336 7004 1166 5842 7008 31 4
Rubiaceae Coffea   COFCA 46907 38308 16121 4494 11713 16207 20 10
Rubiaceae Coffea   COFAR 1071 1059 1007 42 965 1007 3 1
  1. species: SOLLC: Solanum lycopersicum; SOLPN: Solanum pennellii; SOLHA: Solanum habrochaites; SOLLP: S. lycopersicum X S. pimpinellifolium; SOLTU: Solanum tuberosum; SOLCH: Solanum chacoense; TOBAC: Nicotiana tabacum; NICBE: Nicotiana benthamiana; NICLS: Nicotiana langsdorffii x Nicotiana sanderae; NICSY: Nicotiana sylvestris; NICAT: Nicotiana attenuata; PETHY: Petunia x hybrida; CAPAN: Capsicum annuum; CAPCH: Capsicum chinense; COFCA: Coffea canephora; COFAR: Coffea arabica.
  2. nr EST: non-redundant ESTs. It is the number of EST sequences obtained after the removal of over-represented ESTs from each collection. Gene indices are created by grouping overlapping EST sequences into clusters. Each cluster corresponds to a unique gene. TCs: tentative consensus; TCs are generated from multiple sequence alignments of ESTs (assembling process). sESTs: singleton ESTs. The total transcripts number is obtained adding the TCs to the sESTs. The number of ESTs and TCs which are mapped onto the S. lycopersicum genome is included too.