Figure 2

The results of using phylogenetically-informed annotation (PIA) to search 28 new transcriptomes for light-interacting genes. Here, cells shaded in black represent orthologs of LIT genes that are present in our transcriptomes. We have named genes based on conventions for Drosophila melanogaster whenever possible. Otherwise, gene names are given for Mus musculus. Cells marked "C" are hits from our transcriptomes that may represent contamination or assembly errors. The columns represent the following transcriptomes (where A = Cephalopods; B = Arthropods; and C = Cnidarians): 1 = Chiroteuthis calyx eye; 2 = Euprymna scolopes eye; 3 = Galiteuthis armata eye; 4 = Octopus bimaculoides skin; 5 = Uroteuthis edulis eye; 6 = Vampyroteuthis infernalis eye; 7 = Asellus aquaticus cave head; 8 = Asellus aquaticus embryos and hatchlings; 9 = Asellus aquaticus hybrid head; 10 = Asellus aquaticus surface head; 11 = Benthesicymus bartletti eye; 12 = Caecidotea bicrenata adult head; 13 = Caecidotea bicrenata embryos; 14 = Caecidotea forbesi adult head; 15 = Caecidotea forbesi embryos; 16 = Euphilomedes carcharodonta embryos; 17 = Hemisquilla californiensis eyes; 18 = Ischnura ramburii head; 19 = Limulus polyphemus lateral eye; 20 = Limulus polyphemus median eye; 21 = Limulus polyphemus ventral eye; 22 = Procambarus alleni eye; 23 = Procambarus franzi eye; 24 = Pseudosquilla ciliata eye; 25 = Systellaspis debilis eye; 26 = Telebasis salva head; 27 = Tripedalia cystophora eyes; 28 = Tripedalia cystophora planula larvae.