Table 1 The number of reads and percentage attained after quality control and/or alignment
From: Masking as an effective quality control method for next-generation sequencing data analysis
Aligners | No quality control | Trimming | Masking |
|---|---|---|---|
27,528,260 | 25,570,162 (92.9%) | 27,528,260 (100%) | |
BWA | 25,843,686 (93.9%) | 25,113,197 (91.2%) | 22,617,992 (82.2%) |
BOWTIE2 | 26,784,763 (97.3%) | 25,286,787 (91.9%) | 24,415,121 (88.7%) |