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Table 1 The number of reads and percentage attained after quality control and/or alignment

From: Masking as an effective quality control method for next-generation sequencing data analysis

Aligners No quality control Trimming Masking
27,528,260 25,570,162 (92.9%) 27,528,260 (100%)
BWA 25,843,686 (93.9%) 25,113,197 (91.2%) 22,617,992 (82.2%)
BOWTIE2 26,784,763 (97.3%) 25,286,787 (91.9%) 24,415,121 (88.7%)
  1. The percentage is calculated to the number reads with no quality control.