VTBuilders Graphical User Interface (GUI). Green boxes indicate completed steps of the pipeline while grey indicate those yet to be performed. The yellow box shows the step that is currently running while the yellow text provides a brief description of the step currently running. The inset panel displays the setup area that the user is presented with when they initially double click the jar file. The red circle indicates the command that is required if the user wishes to use the software without a GUI via the command line.