Skip to main content

Table 1 The 54 known SSTs used to seed the simulation of reads as described in case study 1

From: VTBuilder: a tool for the assembly of multi isoform transcriptomes

Protein No. of isoforms Length range
SVMP I 1 1600
SVMP II 3 1600 - 2000
SVMP III 10 1600 - 2300
Serine Protease 9 700 - 1400
Phospholipase A2 3 600
CTL 16 500 - 700
NGF 1 700
CRISP 1 850
VEGF 1 650
LAAO 1 1450
Creatine Kinase 1 790
β-Actin 1 630
HSP90 Endoplasmin 1 780
ATPase6 1 720
Cytochrome C Oxidase 1 880
Poly A Binding Protein 1 680
Cytochrome B 1 800
Protein Disulfide Isomerase 1 1650
  1. Column 2 contains the number of sequences representing each protein family. Column 3 displays the lengths of the sequences included.
\