Table 1 The 54 known SSTs used to seed the simulation of reads as described in case study 1
From: VTBuilder: a tool for the assembly of multi isoform transcriptomes
Protein | No. of isoforms | Length range |
|---|---|---|
SVMP I | 1 | 1600 |
SVMP II | 3 | 1600 - 2000 |
SVMP III | 10 | 1600 - 2300 |
Serine Protease | 9 | 700 - 1400 |
Phospholipase A2 | 3 | 600 |
CTL | 16 | 500 - 700 |
NGF | 1 | 700 |
CRISP | 1 | 850 |
VEGF | 1 | 650 |
LAAO | 1 | 1450 |
Creatine Kinase | 1 | 790 |
β-Actin | 1 | 630 |
HSP90 Endoplasmin | 1 | 780 |
ATPase6 | 1 | 720 |
Cytochrome C Oxidase | 1 | 880 |
Poly A Binding Protein | 1 | 680 |
Cytochrome B | 1 | 800 |
Protein Disulfide Isomerase | 1 | 1650 |