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Table 1 Application of meta-eqtl in meta-analysis of chrX eQTLs by gender*

From: Meta-eQTL: a tool set for flexible eQTL meta-analysis

Tissue

#eQTL

# peak eSNP in RegDB

RegDB enrichment †

# GWAS loci ‡

Liver

    

cis

131

80

2.36 (2.01 - 2.75)

34

trans

52

9

1.98 (1.17 - 3.16)

2

Omental

    

cis

207

115

2.92 (2.56 -3.32)

54

trans

28

10

1.04 (0.64 -1.60)

0

SubQ

    

cis

163

83

3.23 (2.81 - 3.72)

30

trans

18

8

1.39 (0.80 - 2.10)

1

  1. *10% FDR eQTLs on chromosome X. Omental: omental fat tissue, SubQ: Subcutaneous fat tissue; †Enrichment of ChrX eSNP in RegulomeDB database [10], odds ratio (95% confidence interval) are presented; ‡Number of ChrX eQTLs underlying GWAS loci.
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BMC Bioinformatics

ISSN: 1471-2105

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