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Table 1 Comparisons between the results shown by the JRC GMO-Matrix (M) and observations made experimentally (E) for a subset of methods (columns) and events (rows)

From: JRC GMO-Matrix: a web application to support Genetically Modified Organisms detection strategies

 

Methods

 

QL-CON-00-008 (CTP2-CP4EPSPS)

QT-ELE-00-004 (p35S)

QL-ELE-00-013 (tNos)

QL-ELE-00-014 (bar)

QL-ELE-00-016 (CryIAb/Ac)

QT-ELE-00-002 (pat)

Events

M

E

M

E

M

E

M

E

M

E

M

E

ACS-GH001-3

0

-

2

+

2

+

2

+

0

-

0

-

MON-01445-2

2

+

2

+

2

+

0

-

0

+

0

-

MON-15985-7 *

0

+

2

+

2

+

0

-

2

+

0

-

MON-00531-6

0

+

2

+

2

+

0

-

2

+

0

-

DAS-24236-5 **

0

-

0

+

0

-

0

-

0

-

2

+

MON-88913-8

2

+

2

+

0

-

0

-

0

+

0

-

BCS-GH002-5

0

-

0

-

0

-

0

-

0

-

0

-

BCS-GH005-8

0

-

1

+

2

+

2

+

0

-

0

-

BCS-GH004-7

0

-

2

+

2

+

2

+

0

-

0

-

SYN-EV176-9

0

-

2

+

0

-

2

+

0

-

0

-

DAS-01507-1

0

-

2

+

0

-

0

-

0

-

2

+

SYN-E3272-5

0

-

0

-

2

+

0

-

0

-

0

-

DAS-59122-7

0

-

2

+

0

-

0

-

0

-

2

+

SYN-IR604-5

0

-

0

-

2

+

0

-

0

-

0

-

MON-00810-6

0

-

2

+

0

-

0

-

0

-

0

-

MON-00863-5

0

-

2

+

2

+

0

-

0

-

0

-

MON-88017-3

2

+

2

+

2

+

0

-

0

-

0

-

MON-00603-6

2

+

2

+

2

+

0

-

0

-

0

-

ACS-ZM003-2

0

-

2

+

0

-

0

-

0

-

2

+

MON-89034-3

0

-

2

+

2

+

0

-

0

-

0

-

SYN-BT011-1

0

-

2

+

2

+

0

-

2

+

2

+

MON-00021-9

0

-

0

-

2

+

0

-

0

-

0

-

DP-098140-6

0

-

2

+

0

-

0

-

0

-

0

-

SYN-IR162-4

0

-

0

-

2

+

0

-

0

-

0

-

MON-87460-4

0

-

2

+

2

+

0

-

0

-

0

-

DAS-40278-9

0

-

0

-

0

-

0

-

0

-

0

-

BPS-25271-9

0

-

0

-

2

+

0

-

0

-

0

-

MON-00073-7

2

+

0

-

0

-

0

-

0

-

0

-

ACS-BN005-8

0

-

0

-

2

+

2

+

0

-

0

-

ACS-BN003-6

0

-

0

-

2

+

2

+

0

-

0

-

ACS-BN008-2

0

-

2

+

0

-

0

-

0

-

2

+

ACS-BN007-1

0

-

2

+

0

-

0

-

0

-

2

+

ACS-BN001-4

0

-

0

-

2

+

2

+

0

-

0

-

ACS-BN004-7

0

-

0

-

2

+

2

+

0

-

0

-

ACS-BN002-5

0

-

0

-

2

+

2

+

0

-

0

-

ACS-OS002-5

0

-

2

+

0

-

2

+

0

-

0

-

ACS-GM005-3

0

-

2

+

0

-

0

-

0

-

2

+

MON-89788-1

2

+

0

+

0

+

0

-

0

-

0

-

DP-356043-5

0

-

2

+

0

-

0

-

0

-

0

-

DP-305423-1

0

-

0

+

0

+

0

-

0

-

0

-

ACS-GM006-4

0

-

2

+

0

-

0

-

0

-

2

+

BPS-CV127-9

0

-

0

-

0

-

0

-

0

-

0

-

MON-87701-2

0

-

0

-

0

-

0

-

2

+

0

-

MON-87705-6

2

+

0

-

0

-

0

-

0

-

0

-

MST-FG072-3

0

-

0

-

2

+

0

-

0

-

0

-

DAS-68416-4

0

-

0

-

0

-

0

-

0

-

2

+

MON-04032-6

0

-

2

+

2

+

0

-

0

-

0

-

KM-000H71-4

2

+

0

-

0

-

0

-

0

-

0

-

  1. The methods names refer to the GMOMETHODS database identification code, with in parenthesis the target sequences. Events names are the unique identifiers associated with the GM transformation events. In MON-01445-2 and in MON-88913-8 traces of the MON-00531-6 were detected. In MON-15985-7and MON-00531-6 traces of the event MON-01445-2 were detected. In DAS-24236-5 x DAS-21023-5, MON-89788-1 and DP-305423-1 traces of MON-04032-6 were detected.
  2. -: no signal observed, +: positive signal observed. *This event is a retransformation of event MON-00531-6, so both DNA sequences were used for the Matrix simulation. **This event is only available as a stacked event (DAS-24236-5 x DAS-21023-5), which was used for the experimental tests.
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BMC Bioinformatics

ISSN: 1471-2105

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