Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach

BMC Bioinformatics

Table 2 Cluster summary

Number and type of clusters automatically determined by GMACS, STAMP, and MoSta for the 79 motif JASPAR dataset originally grouped into 11 FBPs manually by Sandelin and Wasserman. GMACS achieves the highest number of homogeneous clusters while maintaining a low number of both heterogeneous clusters and singletons.

ISSN: 1471-2105