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Table 4 Frequencies of most common confidence sets using multiple comparisons with the best with a coverage of 0.90, when drivers are known

From: Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling

Confidence sets

Conjunction

 

No conjunction

 

Diff

PFD

PND

FPF

 

Diff

PFD

PND

FPF

OT, OT-A

0.60

0.47

0.03

0.05

 

0.65

0.53

0.23

0.05

DiP, DiP-A, OT, OT-A

0.02

0.08

-

0.57

 

0.03

0.16

0.05

0.59

CBN, CBN-A

0.02

0.09

0.61

-

 

-

0.04

0.32

0.01

DiP, DiP-A

-

0.04

0.01

0.17

 

0.01

0.02

-

0.16

CBN, CBN-A, OT, OT-A

0.02

0.02

0.07

-

 

0.02

0.03

0.12

0.01

DiP-A, OT, OT-A

-

0.06

-

0.02

 

0.02

0.05

0.02

0.03

OT-A

0.16

0.09

0.06

-

 

0.15

0.04

0.13

-

OT

0.07

0.05

-

0.01

 

0.03

0.03

-

-

DiP, OT

-

0.04

-

0.08

 

0.01

0.05

-

0.08

CBN-A

0.03

-

0.06

-

 

-

-

0.01

-

  1. Combinations not shown have a frequency less than 0.05 for all columns. Frequencies normalized by column total (N = 432).
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BMC Bioinformatics

ISSN: 1471-2105

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