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Table 1 The CPU and memory usage for SCNVsim simulations with different parameter settings, including the number of SV events, ploidy status and number of sub-clones, in both human and mouse reference genomes*

From: SCNVSim: somatic copy number variation and structure variation simulator

Simulation Simulation parameters Human (hg19) Mouse (mm10)
CPU (min) Memory (GB) CPU (min) Memory (GB)
Germline simulation Default parameters 3.9 7.9 3.3 7.3
Tumor simulation single clone with 50 SVs 2.1 6.2 1.7 5.5
single clone with 50 SVs, triploid 2.6 6.3 2.4 5.4
single clone with 50 Svs, tetraploid 3.6 6.8 2.9 5.6
single clone with 200 SVs 2.1 6.3 1.9 5.6
single clone with 300 SVs 2.3 6.6 1.9 5.6
2 clones with 50 and 150 SVs 3.9 7.9 3.6 6.4
3 clones with 50, 150, and 150 SVs 5.9 8.0 4.7 7.1
  1. *Analysis was performed on a Linux computer with two Intel® Xeon(R) E5-2620 v2 CPUs and 32 GB memory.