Table 1 The CPU and memory usage for SCNVsim simulations with different parameter settings, including the number of SV events, ploidy status and number of sub-clones, in both human and mouse reference genomes*
From: SCNVSim: somatic copy number variation and structure variation simulator
Simulation | Simulation parameters | Human (hg19) | Mouse (mm10) | ||
|---|---|---|---|---|---|
CPU (min) | Memory (GB) | CPU (min) | Memory (GB) | ||
Germline simulation | Default parameters | 3.9 | 7.9 | 3.3 | 7.3 |
Tumor simulation | single clone with 50 SVs | 2.1 | 6.2 | 1.7 | 5.5 |
single clone with 50 SVs, triploid | 2.6 | 6.3 | 2.4 | 5.4 | |
single clone with 50 Svs, tetraploid | 3.6 | 6.8 | 2.9 | 5.6 | |
single clone with 200 SVs | 2.1 | 6.3 | 1.9 | 5.6 | |
single clone with 300 SVs | 2.3 | 6.6 | 1.9 | 5.6 | |
2 clones with 50 and 150 SVs | 3.9 | 7.9 | 3.6 | 6.4 | |
3 clones with 50, 150, and 150 SVs | 5.9 | 8.0 | 4.7 | 7.1 | |