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Table 1 Average time (in seconds) taken to generate a summary alignment from 1000 samples, for the three simulated datasets

From: Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

  Indel rate
  Low Medium High
MinRisk (C) 1.5 1.8 2.2
MinRisk (C +) 1.9 2.4 2.8
MergeAlign 12.0 17.6 22.9
S-Coffee 43.0 48.4 50.9
  1. All tests performed on a single AMD Opteron 2.3GHz core.