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Table 1 Average time (in seconds) taken to generate a summary alignment from 1000 samples, for the three simulated datasets

From: Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

 

Indel rate

 

Low

Medium

High

MinRisk (C)

1.5

1.8

2.2

MinRisk (C +)

1.9

2.4

2.8

MergeAlign

12.0

17.6

22.9

S-Coffee

43.0

48.4

50.9

  1. All tests performed on a single AMD Opteron 2.3GHz core.
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BMC Bioinformatics

ISSN: 1471-2105

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