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Table 10 Short UTR collection

From: Secondary structural entropy in RNA switch (Riboswitch) identification

Start

End

Strand

Gene

Length

42325

42403

+

fixA

79

246641

246712

+

yafL

72

570070

570116

+

ybcL

47

848134

848173

-

dps

40

879876

879950

+

dacC

75

989579

989637

-

pncB

59

1108480

1108558

+

mdoG

79

1331812

1331879

+

cysB

68

1397550

1397576

-

fnr

27

1570069

1570096

-

gadB

28

1732381

1732459

+

mepH

79

1927731

1927756

-

yebE

26

2039370

2039399

+

zinT

30

2268700

2268748

+

rtn

49

2380676

2380735

+

elaD

60

2541550

2541579

-

cysP

30

2823813

2823854

+

srlA

42

2982146

2982216

-

kduI

71

3134393

3134425

-

pitB

33

3276888

3276936

+

kbaZ

49

3467875

3467918

-

chiA

44

3651959

3651984

+

slp

26

3735493

3735520

+

malS

28

3845190

3845221

-

uhpT

32

3909548

3909591

-

pstS

44

4028994

4029036

-

fadB

43

4213425

4213501

+

aceB

77

4244442

4244487

-

malE

46

4358054

4358129

-

cadB

76

4492620

4492646

+

indK

27

  1. 30 randomly chosen untranslated regions of lengths less than 80 nt corresponding to the σ-70 transcription factor binding sites in Escherichia coli str. K-12 substr. MG1655 (GenBankID: U00096.2). Column Start denotes start of the binding site. End denotes the downstream start codon. Gene denotes the name of the first gene in the corresponding mRNA. Length denotes the length of the UTR.