Secondary structural entropy in RNA switch (Riboswitch) identification

BMC Bioinformatics

Table 10 Short UTR collection

Start	End	Strand	Gene	Length
42325	42403	+	fixA	79
246641	246712	+	yafL	72
570070	570116	+	ybcL	47
848134	848173	-	dps	40
879876	879950	+	dacC	75
989579	989637	-	pncB	59
1108480	1108558	+	mdoG	79
1331812	1331879	+	cysB	68
1397550	1397576	-	fnr	27
1570069	1570096	-	gadB	28
1732381	1732459	+	mepH	79
1927731	1927756	-	yebE	26
2039370	2039399	+	zinT	30
2268700	2268748	+	rtn	49
2380676	2380735	+	elaD	60
2541550	2541579	-	cysP	30
2823813	2823854	+	srlA	42
2982146	2982216	-	kduI	71
3134393	3134425	-	pitB	33
3276888	3276936	+	kbaZ	49
3467875	3467918	-	chiA	44
3651959	3651984	+	slp	26
3735493	3735520	+	malS	28
3845190	3845221	-	uhpT	32
3909548	3909591	-	pstS	44
4028994	4029036	-	fadB	43
4213425	4213501	+	aceB	77
4244442	4244487	-	malE	46
4358054	4358129	-	cadB	76
4492620	4492646	+	indK	27

30 randomly chosen untranslated regions of lengths less than 80 nt corresponding to the σ-70 transcription factor binding sites in Escherichia coli str. K-12 substr. MG1655 (GenBankⒸID: U00096.2). Column Start denotes start of the binding site. End denotes the downstream start codon. Gene denotes the name of the first gene in the corresponding mRNA. Length denotes the length of the UTR.

ISSN: 1471-2105