Table 25 Top entropy hits in B. subtilis forward strand
From: Secondary structural entropy in RNA switch (Riboswitch) identification
B. subtilis | Start | End | Strand | Upstream operon | Upstream gene | Dist. to upstream | MFE | MFE p. Val. | GC | RND | RND p. Val. | Uracil | Dist. to downstream | Downstream gene | Downstream operon | Probability |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
200 nt | 3714838 | 3715037 | forward | BSU36030 | ywrK | -794 | -49.70 | - | 0.3300 | 126.0619965 | - | 0.3850 | 2302 | cotG | BSU36070 | 0.9275143743 |
200 nt | 3359769 | 3359968 | forward | BSU32650 | yurS | -5183 | -66.40 | - | 0.4600 | 123.4530029 | - | 0.3450 | 12702 | yuzL | BSU32849 | 0.9236087203 |
200 nt | 243592 | 243791 | forward | BSU02170 | ybfB | -5364 | -57.00 | - | 0.4450 | 126.5479965 | - | 0.3700 | 202 | purT | BSU02230 | 0.9204539061 |
200 nt | 2093202 | 2093401 | forward | BSU19200 | desR | -799 | -55.20 | - | 0.4350 | 126.5859985 | - | 0.4400 | 4802 | yoyB | BSU19259 | 0.9146069884 |
200 nt | 749075 | 749274 | forward | BSU06780 | yeeC | -2977 | -58.19 | - | 0.4450 | 125.6159973 | - | 0.3900 | 602 | yeeG | BSU06820 | 0.9128865004 |
200 nt | 1467005 | 1467204 | forward | BSU13960 | ykwC | -307 | -60.40 | - | 0.4100 | 123.2139969 | - | 0.4150 | 702 | pbpH | BSU13980 | 0.9070840478 |
200 nt | 2281367 | 2281566 | forward | BSU21620 | yokE | 95 | -44.60 | - | 0.2600 | 124.4599991 | - | 0.4300 | 202 | yokD | BSU21630 | 0.9058990479 |
200 nt | 850067 | 850266 | forward | BSU07750 | yflA | -3783 | -57.20 | - | 0.4000 | 124.1029968 | - | 0.3800 | 202 | treP | BSU07800 | 0.9058393836 |
200 nt | 1466905 | 1467104 | forward | BSU13960 | ykwC | -207 | -56.93 | - | 0.3900 | 123.7220001 | - | 0.4200 | 802 | pbpH | BSU13980 | 0.9029595852 |
200 nt | 3759694 | 3759893 | forward | BSU36530 | bcrC | -467 | -62.40 | - | 0.3850 | 121.3089981 | - | 0.4500 | 902 | ywnH | BSU36560 | 0.9023656249 |
200 nt | 3268355 | 3268554 | forward | BSU31810 | yuzE | -4032 | -44.66 | - | 0.3750 | 127.7630005 | - | 0.4450 | 8502 | yukF | BSU31920 | 0.8946693540 |
200 nt | 2073039 | 2073238 | forward | BSU18960 | yozM | -7563 | -52.00 | - | 0.3250 | 123.0869980 | - | 0.4450 | 1302 | yobN | BSU19020 | 0.8944090009 |
200 nt | 748975 | 749174 | forward | BSU06780 | yeeC | -2877 | -58.80 | - | 0.4750 | 125.1039963 | - | 0.3750 | 702 | yeeG | BSU06820 | 0.8876969814 |
200 nt | 432172 | 432371 | forward | BSU03780 | phrC | -1988 | -51.70 | - | 0.3050 | 122.0960007 | - | 0.3450 | 102 | yclN | BSU03800 | 0.8850299716 |
200 nt | 4039583 | 4039782 | forward | BSU39100 | yxiO | -23516 | -53.00 | - | 0.4350 | 125.9430008 | - | 0.4350 | 1802 | hutP | BSU39340 | 0.8843178153 |
200 nt | 531587 | 531786 | forward | BSU_tRNA_51 | trnS-Leu2 | -2066 | -46.60 | - | 0.2650 | 122.5979996 | - | 0.3850 | 102 | sacV | BSU04830 | 0.8803396225 |
200 nt | 665366 | 665565 | forward | BSU06130 | ydjC | -598 | -64.50 | - | 0.4900 | 122.9229965 | - | 0.3300 | 2002 | gutB | BSU06150 | 0.8790112138 |
200 nt | 3714938 | 3715137 | forward | BSU36030 | ywrK | -894 | -41.70 | - | 0.3350 | 126.8040009 | - | 0.3550 | 2202 | cotG | BSU36070 | 0.8768669963 |
200 nt | 3685812 | 3686011 | forward | BSU35770 | tagC | -947 | -51.80 | - | 0.3900 | 124.4950027 | - | 0.4150 | 2902 | gerBA | BSU35800 | 0.8747953176 |
200 nt | 2093302 | 2093501 | forward | BSU19200 | desR | -899 | -61.40 | - | 0.4400 | 122.2649994 | - | 0.3700 | 4702 | yoyB | BSU19259 | 0.8738172650 |
200 nt | 1012447 | 1012646 | forward | BSU09360 | yhdC | -598 | -51.20 | - | 0.3650 | 123.8079987 | - | 0.4100 | 3102 | spoVR | BSU09400 | 0.8727893829 |
200 nt | 955595 | 955794 | forward | BSU08780 | ygaJ | 89 | -59.79 | - | 0.4050 | 121.6190033 | - | 0.3600 | 202 | thiC | BSU08790 | 0.8710888028 |
200 nt | 3685912 | 3686111 | forward | BSU35770 | tagC | -1047 | -53.60 | - | 0.3950 | 123.7610016 | - | 0.3950 | 2802 | gerBA | BSU35800 | 0.8705116510 |
200 nt | 4134651 | 4134850 | forward | BSU40190 | fbp | -4508 | -58.20 | - | 0.4900 | 125.0049973 | - | 0.3900 | 602 | yycS | BSU40240 | 0.8676616549 |
200 nt | 45433 | 45632 | forward | BSU00360 | yabC | -535 | -42.70 | - | 0.3000 | 124.7969971 | - | 0.4200 | 102 | metS | BSU00380 | 0.8666248322 |
200 nt | 2531951 | 2532150 | forward | BSU24210 | yqiG | -14294 | -62.90 | - | 0.5050 | 123.5699997 | - | 0.3450 | 9002 | yqhQ | BSU24490 | 0.8666005135 |
200 nt | 2531951 | 2532150 | forward | BSU24210 | yqiG | -14294 | -62.90 | - | 0.5050 | 123.5699997 | - | 0.3450 | 9002 | yqhQ | BSU24490 | 0.8666005135 |
200 nt | 1540786 | 1540985 | forward | BSU14680 | ykzC | -1995 | -57.52 | - | 0.4350 | 123.3629990 | - | 0.3750 | 1002 | ylaA | BSU14710 | 0.8663020134 |
200 nt | 1406312 | 1406511 | forward | BSU13390 | ykoT | -1721 | -71.55 | - | 0.5450 | 121.3809967 | - | 0.3250 | 3502 | ykoX | BSU13430 | 0.8654530644 |
200 nt | 4029283 | 4029482 | forward | BSU39100 | yxiO | -13216 | -50.90 | - | 0.3850 | 124.3079987 | - | 0.4000 | 12102 | hutP | BSU39340 | 0.8653051257 |
200 nt | 1526531 | 1526730 | forward | BSU14550 | ykrA | -273 | -63.20 | - | 0.4800 | 122.5350037 | - | 0.3350 | 602 | ykyA | BSU14570 | 0.8648978472 |
200 nt | 2220040 | 2220239 | forward | BSU20929 | yoyI | -6863 | -38.72 | - | 0.3800 | 129.0460052 | - | 0.3700 | 2202 | yonP | BSU21030 | 0.8647925854 |
200 nt | 192105 | 192304 | forward | BSU01590 | ybaS | -12421 | -51.20 | - | 0.4350 | 125.8399963 | - | 0.4100 | 2002 | trnSL-Glu2 | BSU_tRNA_75 | 0.8642573953 |
200 nt | 1780406 | 1780605 | forward | BSU17050 | mutL | -87 | -52.60 | - | 0.3550 | 122.5059967 | - | 0.3650 | 1402 | pksA | BSU17080 | 0.8627771139 |
200 nt | 4037783 | 4037982 | forward | BSU39100 | yxiO | -21716 | -57.74 | - | 0.4400 | 123.2249985 | - | 0.3950 | 3602 | hutP | BSU39340 | 0.8606380820 |
200 nt | 1264357 | 1264556 | forward | BSU_tRNA_83 | trnSL-Val2 | -1397 | -33.05 | - | 0.2700 | 127.4010010 | - | 0.4200 | 602 | yjcN | BSU11920 | 0.8592507839 |
200 nt | 847767 | 847966 | forward | BSU07750 | yflA | -1483 | -59.62 | - | 0.4500 | 122.6080017 | - | 0.3550 | 2502 | treP | BSU07800 | 0.8554052114 |
200 nt | 226266 | 226465 | forward | BSU02050 | ybdO | 81 | -37.20 | - | 0.2300 | 124.2030029 | - | 0.3550 | 202 | ybxG | BSU02060 | 0.8548350334 |
200 nt | 3052246 | 3052445 | forward | BSU29710 | acuC | -9592 | -61.90 | - | 0.4900 | 123.0039978 | - | 0.3400 | 2402 | ytoQ | BSU29850 | 0.8543979526 |
200 nt | 530887 | 531086 | forward | BSU_tRNA_51 | trnS-Leu2 | -1366 | -42.20 | - | 0.3250 | 125.3190002 | - | 0.4000 | 802 | sacV | BSU04830 | 0.8526363969 |
200 nt | 2617117 | 2617316 | forward | BSU25220 | antE | -13743 | -59.90 | - | 0.4500 | 122.3389969 | - | 0.4200 | 3502 | yqeW | BSU25420 | 0.8511158824 |
200 nt | 2221540 | 2221739 | forward | BSU20929 | yoyI | -8363 | -46.30 | - | 0.2850 | 122.2210007 | - | 0.3450 | 702 | yonP | BSU21030 | 0.8502966762 |
200 nt | 2054178 | 2054377 | forward | BSU18820 | yobB | -3127 | -48.70 | - | 0.3450 | 123.2819977 | - | 0.4000 | 2002 | yobD | BSU18850 | 0.8502687216 |
200 nt | 3042946 | 3043145 | forward | BSU29710 | acuC | -292 | -49.94 | - | 0.4350 | 125.8190002 | - | 0.4150 | 11702 | ytoQ | BSU29850 | 0.8499680161 |
200 nt | 2780909 | 2781108 | forward | BSU27150 | yrhK | -7164 | -47.80 | - | 0.3250 | 122.8980026 | - | 0.3750 | 202 | yrhE | BSU27220 | 0.8482846022 |
200 nt | 2723337 | 2723536 | forward | BSU26630 | yrdQ | -594 | -44.00 | - | 0.2950 | 123.3580017 | - | 0.4300 | 2402 | gltR | BSU26670 | 0.8465546370 |
200 nt | 683762 | 683961 | forward | BSU06260 | ydjN | -2790 | -59.40 | - | 0.4800 | 123.3310013 | - | 0.3600 | 3102 | yeaB | BSU06320 | 0.8446838856 |
200 nt | 3052346 | 3052545 | forward | BSU29710 | acuC | -9692 | -56.62 | - | 0.4400 | 123.0849991 | - | 0.3800 | 2302 | ytoQ | BSU29850 | 0.8442399502 |
200 nt | 2405829 | 2406028 | forward | BSU22869 | ypzI | -12171 | -60.30 | - | 0.4650 | 122.4049988 | - | 0.4150 | 3802 | fer | BSU23040 | 0.8431282043 |
200 nt | 579341 | 579540 | forward | BSU05329 | ydzO | -10 | -47.40 | - | 0.3850 | 124.9130020 | - | 0.3050 | 102 | aseR | BSU05330 | 0.8431255221 |
200 nt | 748875 | 749074 | forward | BSU06780 | yeeC | -2777 | -60.60 | - | 0.4600 | 122.0989990 | - | 0.3950 | 802 | yeeG | BSU06820 | 0.8426845670 |
200 nt | 339225 | 339424 | forward | BSU03130 | nadE | -20 | -63.60 | - | 0.4700 | 121.1809998 | - | 0.3250 | 702 | aroK | BSU03150 | 0.8414211273 |
200 nt | 1251377 | 1251576 | forward | BSU11730 | cotO | -1930 | -35.49 | - | 0.3200 | 127.4260025 | - | 0.4800 | 702 | yjcA | BSU11790 | 0.8401102424 |
200 nt | 3640353 | 3640552 | forward | BSU35210 | yvkA | -19956 | -52.60 | - | 0.3600 | 121.8539963 | - | 0.4250 | 6302 | yvyE | BSU35510 | 0.8399478197 |
200 nt | 3686112 | 3686311 | forward | BSU35770 | tagC | -1247 | -51.99 | - | 0.3750 | 122.5879974 | - | 0.4300 | 2602 | gerBA | BSU35800 | 0.8393257856 |
200 nt | 3686112 | 3686311 | forward | BSU35770 | tagC | -1247 | -51.99 | - | 0.3750 | 122.5879974 | - | 0.4300 | 2602 | gerBA | BSU35800 | 0.8393257856 |
200 nt | 1494405 | 1494604 | forward | BSU14240 | rok | 56 | -52.70 | - | 0.4100 | 123.4729996 | - | 0.4150 | 1002 | mobA | BSU14260 | 0.8389207721 |
200 nt | 373532 | 373731 | forward | BSU03410 | bglC | -1741 | -56.90 | - | 0.4500 | 123.1060028 | - | 0.3800 | 2402 | hxlR | BSU03470 | 0.8382304311 |
200 nt | 3686212 | 3686411 | forward | BSU35770 | tagC | -1347 | -45.70 | - | 0.4000 | 125.9280014 | - | 0.4250 | 2502 | gerBA | BSU35800 | 0.8377878666 |
200 nt | 374532 | 374731 | forward | BSU03410 | bglC | -2741 | -56.99 | - | 0.3750 | 120.5049973 | - | 0.3400 | 1402 | hxlR | BSU03470 | 0.8375294805 |
200 nt | 1540186 | 1540385 | forward | BSU14680 | ykzC | -1395 | -61.11 | - | 0.4650 | 121.7969971 | - | 0.3500 | 1602 | ylaA | BSU14710 | 0.8347978592 |
200 nt | 360837 | 361036 | forward | BSU03270 | ycgT | -6870 | -59.70 | - | 0.5000 | 123.5510025 | - | 0.3300 | 2002 | nasA | BSU03330 | 0.8347288966 |
200 nt | 213641 | 213840 | forward | BSU01900 | ybcM | -73 | -36.30 | - | 0.2750 | 125.3079987 | - | 0.3950 | 202 | skfA | BSU01910 | 0.8321032524 |
200 nt | 739678 | 739877 | forward | BSU06730 | yefA | -597 | -51.16 | - | 0.3900 | 123.1309967 | - | 0.4150 | 102 | yefC | BSU06750 | 0.8301935792 |
200 nt | 1495005 | 1495204 | forward | BSU14240 | rok | -544 | -50.26 | - | 0.4150 | 124.2959976 | - | 0.3800 | 402 | mobA | BSU14260 | 0.8287579417 |
200 nt | 1541686 | 1541885 | forward | BSU14680 | ykzC | -2895 | -43.10 | - | 0.3250 | 124.1309967 | - | 0.3650 | 102 | ylaA | BSU14710 | 0.8283772469 |
200 nt | 1268629 | 1268828 | forward | BSU11970 | yjcS | 62 | -40.70 | - | 0.2700 | 123.2060013 | - | 0.4250 | 102 | yjdA | BSU11980 | 0.8273611665 |
200 nt | 652232 | 652431 | forward | BSU06030 | groEL | -265 | -37.70 | - | 0.2950 | 125.2659988 | - | 0.4500 | 1102 | ydiM | BSU06040 | 0.8273396492 |
200 nt | 2108093 | 2108292 | forward | BSU19350 | yocS | -539 | -59.80 | - | 0.4700 | 122.2429962 | - | 0.3700 | 11202 | yojI | BSU19440 | 0.8269666433 |
200 nt | 728532 | 728731 | forward | BSU06640 | yerI | -2436 | -46.30 | - | 0.3100 | 122.2779999 | - | 0.3600 | 102 | gatC | BSU06670 | 0.8268005848 |
200 nt | 1540686 | 1540885 | forward | BSU14680 | ykzC | -1895 | -60.72 | - | 0.4350 | 120.6729965 | - | 0.3350 | 1102 | ylaA | BSU14710 | 0.8265900016 |
200 nt | 3746052 | 3746251 | forward | BSU36380 | rapD | -540 | -57.10 | - | 0.4350 | 122.1200027 | - | 0.3850 | 2902 | ywoH | BSU36440 | 0.8260388970 |
200 nt | 1495105 | 1495304 | forward | BSU14240 | rok | -644 | -55.30 | - | 0.3950 | 121.4899979 | - | 0.4000 | 302 | mobA | BSU14260 | 0.8259468675 |
200 nt | 1923034 | 1923233 | forward | BSU17910 | yneF | -168 | -40.60 | - | 0.2500 | 122.5039978 | - | 0.3500 | 102 | ccdA | BSU17930 | 0.8253148198 |
200 nt | 746475 | 746674 | forward | BSU06780 | yeeC | -377 | -31.51 | - | 0.2650 | 126.6760025 | - | 0.5000 | 3202 | yeeG | BSU06820 | 0.8248795867 |
200 nt | 2625315 | 2625514 | forward | BSU25420 | yqeW | -3576 | -54.30 | - | 0.4850 | 124.8850021 | - | 0.3550 | 10402 | rpsT | BSU25550 | 0.8240758777 |
200 nt | 4007404 | 4007603 | forward | BSU39020 | yxjA | -360 | -48.97 | - | 0.4150 | 124.6660004 | - | 0.3950 | 2902 | citH | BSU39060 | 0.8239642382 |
200 nt | 2376722 | 2376921 | forward | BSU22510 | ypjC | -15121 | -44.40 | - | 0.3450 | 124.1429977 | - | 0.4000 | 16602 | ypzI | BSU22869 | 0.8239628077 |
200 nt | 3640453 | 3640652 | forward | BSU35210 | yvkA | -20056 | -45.52 | - | 0.3450 | 123.6029968 | - | 0.4400 | 6202 | yvyE | BSU35510 | 0.8211722970 |
200 nt | 530787 | 530986 | forward | BSU_tRNA_51 | trnS-Leu2 | -1266 | -47.10 | - | 0.3350 | 122.6100006 | - | 0.3850 | 902 | sacV | BSU04830 | 0.8206871748 |
200 nt | 4139260 | 4139459 | forward | BSU40240 | yycS | -3397 | -60.10 | - | 0.5050 | 123.1039963 | - | 0.3450 | 902 | rapG | BSU40300 | 0.8204663396 |
200 nt | 184305 | 184504 | forward | BSU01590 | ybaS | -4621 | -44.20 | - | 0.4000 | 125.9649963 | - | 0.4400 | 9802 | trnSL-Glu2 | BSU_tRNA_75 | 0.8200225234 |
200 nt | 792182 | 792381 | forward | BSU07230 | yetM | -656 | -69.00 | - | 0.5400 | 120.5859985 | - | 0.3000 | 402 | yetO | BSU07250 | 0.8170907497 |
200 nt | 4007304 | 4007503 | forward | BSU39020 | yxjA | -260 | -49.30 | - | 0.4200 | 124.4300003 | - | 0.3950 | 3002 | citH | BSU39060 | 0.8151187301 |
200 nt | 3726352 | 3726551 | forward | BSU36160 | ywqM | -1918 | -63.90 | - | 0.5250 | 122.0380020 | - | 0.3200 | 7402 | ywqB | BSU36270 | 0.8136813045 |
200 nt | 3201391 | 3201590 | forward | BSU31170 | yulF | -3400 | -50.17 | - | 0.4150 | 123.8629990 | - | 0.3950 | 11102 | tgl | BSU31270 | 0.8136008978 |
200 nt | 3714738 | 3714937 | forward | BSU36030 | ywrK | -694 | -38.82 | - | 0.3050 | 124.7269974 | - | 0.4300 | 2402 | cotG | BSU36070 | 0.8135811090 |
200 nt | 2160707 | 2160906 | forward | BSU20000 | yosU | -1924 | -34.70 | - | 0.3050 | 126.3850021 | - | 0.4300 | 9002 | yosA | BSU20190 | 0.8132891059 |
200 nt | 192805 | 193004 | forward | BSU01590 | ybaS | -13121 | -48.80 | - | 0.4150 | 124.4029999 | - | 0.3650 | 1302 | trnSL-Glu2 | BSU_tRNA_75 | 0.8131257892 |
200 nt | 2217640 | 2217839 | forward | BSU20929 | yoyI | -4463 | -44.10 | - | 0.2800 | 121.7109985 | - | 0.4100 | 4602 | yonP | BSU21030 | 0.8124790788 |
200 nt | 182405 | 182604 | forward | BSU01590 | ybaS | -2721 | -53.80 | - | 0.4150 | 122.3399963 | - | 0.3550 | 11702 | trnSL-Glu2 | BSU_tRNA_75 | 0.8117757440 |
200 nt | 2276877 | 2277076 | forward | BSU21520 | yolC | -4287 | -38.90 | - | 0.3250 | 125.3180008 | - | 0.4500 | 3002 | yokF | BSU21610 | 0.8117634654 |
200 nt | 1997137 | 1997336 | forward | BSU18190 | yngC | -48774 | -50.97 | - | 0.4000 | 122.9609985 | - | 0.3250 | 5402 | iseA | BSU18380 | 0.8112495542 |
200 nt | 2276977 | 2277176 | forward | BSU21520 | yolC | -4387 | -39.30 | - | 0.3200 | 124.9540024 | - | 0.4200 | 2902 | yokF | BSU21610 | 0.8106592894 |
200 nt | 749175 | 749374 | forward | BSU06780 | yeeC | -3077 | -58.49 | - | 0.4600 | 121.9140015 | - | 0.3700 | 502 | yeeG | BSU06820 | 0.8099753261 |
200 nt | 3726652 | 3726851 | forward | BSU36160 | ywqM | -2218 | -52.11 | - | 0.4550 | 124.3000031 | - | 0.3950 | 7102 | ywqB | BSU36270 | 0.8091073036 |
200 nt | 1251277 | 1251476 | forward | BSU11730 | cotO | -1830 | -37.50 | - | 0.3650 | 127.1539993 | - | 0.5150 | 802 | yjcA | BSU11790 | 0.8088676929 |
200 nt | 1405212 | 1405411 | forward | BSU13390 | ykoT | -621 | -56.26 | - | 0.4050 | 120.9140015 | - | 0.3500 | 4602 | ykoX | BSU13430 | 0.8086636066 |
200 nt | 3268455 | 3268654 | forward | BSU31810 | yuzE | -4132 | -52.90 | - | 0.3900 | 121.7509995 | - | 0.4200 | 8402 | yukF | BSU31920 | 0.8081850410 |
200 nt | 1467105 | 1467304 | forward | BSU13960 | ykwC | -407 | -41.17 | - | 0.3700 | 125.7789993 | - | 0.4650 | 602 | pbpH | BSU13980 | 0.8068280816 |
200 nt | 1406412 | 1406611 | forward | BSU13390 | ykoT | -1821 | -67.24 | - | 0.5600 | 121.6240005 | - | 0.3150 | 3402 | ykoX | BSU13430 | 0.8052443266 |
200 nt | 2897488 | 2897687 | forward | BSU28180 | ysxD | -17529 | -28.00 | - | 0.2150 | 125.7649994 | - | 0.4100 | 202 | ysnD | BSU28320 | 0.8036175966 |
200 nt | 1474672 | 1474871 | forward | BSU14010 | cheV | -57 | -50.60 | - | 0.3800 | 122.1959991 | - | 0.3650 | 3302 | ykuF | BSU14060 | 0.8031342626 |
200 nt | 746375 | 746574 | forward | BSU06780 | yeeC | -277 | -31.50 | - | 0.2800 | 126.4580002 | - | 0.5000 | 3302 | yeeG | BSU06820 | 0.8004485369 |