Table 26 Top entropy hits in B. subtilis reverse strand
From: Secondary structural entropy in RNA switch (Riboswitch) identification
B. subtilis | Start | End | Strand | Upstream operon | Upstream gene | Dist. to upstream | MFE | MFE p. Val. | GC | RND | RND p. Val. | Uracil | Dist. to downstream | Downstream gene | Downstream operon | Probability |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
200 nt | 3717398 | 3717597 | reverse | BSU36100 | ywrD | -1637 | -51.30 | - | 0.3650 | 130.8540039 | - | 0.3950 | 399 | cotH | BSU36060 | 0.9702541828 |
200 nt | 3717498 | 3717697 | reverse | BSU36100 | ywrD | -1537 | -50.60 | - | 0.3500 | 129.2720032 | - | 0.4000 | 499 | cotH | BSU36060 | 0.9603169560 |
200 nt | 4066209 | 4066408 | reverse | BSU39600 | yxeC | -299 | -67.50 | - | 0.4900 | 125.4860001 | - | 0.3650 | 799 | yxeF | BSU39570 | 0.9434255362 |
200 nt | 786306 | 786505 | reverse | BSU07220 | yetL | -3247 | -72.30 | - | 0.5600 | 125.9049988 | - | 0.3050 | 499 | yetH | BSU07160 | 0.9432973266 |
200 nt | 2249144 | 2249343 | reverse | BSU21440 | bdbB | -15982 | -49.00 | - | 0.3700 | 127.3170013 | - | 0.3850 | 1699 | youB | BSU21329 | 0.9216341376 |
200 nt | 2596201 | 2596400 | reverse | BSU25170 | yqfO | -1202 | -42.96 | - | 0.3650 | 129.5290070 | - | 0.4950 | 799 | cshB | BSU25140 | 0.9206426144 |
200 nt | 3717298 | 3717497 | reverse | BSU36100 | ywrD | -1737 | -45.43 | - | 0.3750 | 128.8240051 | - | 0.4200 | 299 | cotH | BSU36060 | 0.9199228883 |
200 nt | 3671576 | 3671775 | reverse | BSU35700 | tagH | -1889 | -33.00 | - | 0.2350 | 128.6049957 | - | 0.4550 | 299 | ggaA | BSU35690 | 0.9113640189 |
200 nt | 3717598 | 3717797 | reverse | BSU36100 | ywrD | -1437 | -50.50 | - | 0.3850 | 126.3860016 | - | 0.4350 | 599 | cotH | BSU36060 | 0.9073441625 |
200 nt | 3373949 | 3374148 | reverse | BSU32890 | yusQ | -2569 | -67.60 | - | 0.4800 | 122.0930023 | - | 0.3600 | 399 | fadM | BSU32850 | 0.8957566023 |
200 nt | 3666584 | 3666783 | reverse | BSU35680 | ggaB | -526 | -44.06 | - | 0.3300 | 126.5329971 | - | 0.4650 | 1299 | mnaA | BSU35660 | 0.8957416415 |
200 nt | 3941142 | 3941341 | reverse | BSU38430 | gspA | -3319 | -43.33 | - | 0.3950 | 128.7100067 | - | 0.4800 | 1599 | ywbA | BSU38390 | 0.8889677525 |
200 nt | 2879134 | 2879333 | reverse | BSU28190 | engB | -649 | -38.80 | - | 0.2800 | 126.4779968 | - | 0.4100 | 99 | hemA | BSU28170 | 0.8852627277 |
200 nt | 3907615 | 3907814 | reverse | BSU38100 | ywcH | -2588 | -46.12 | - | 0.2950 | 123.9560013 | - | 0.3600 | 399 | ywcI | BSU38080 | 0.8837128878 |
200 nt | 1248822 | 1249021 | reverse | BSU11740 | cotZ | -521 | -54.90 | - | 0.5300 | 128.1889954 | - | 0.4000 | 8799 | yjbP | BSU11630 | 0.8796436787 |
200 nt | 2004047 | 2004246 | reverse | BSU18400 | yoeD | -116 | -40.10 | - | 0.3150 | 126.8629990 | - | 0.3900 | 199 | yoeC | BSU18390 | 0.8789740205 |
200 nt | 3671676 | 3671875 | reverse | BSU35700 | tagH | -1789 | -35.80 | - | 0.2600 | 126.5380020 | - | 0.3900 | 399 | ggaA | BSU35690 | 0.8741892576 |
200 nt | 2257744 | 2257943 | reverse | BSU21440 | bdbB | -7382 | -38.35 | - | 0.3350 | 128.0359955 | - | 0.4600 | 10299 | youB | BSU21329 | 0.8739098310 |
200 nt | 2294238 | 2294437 | reverse | BSU21800 | ypkP | -1645 | -57.60 | - | 0.3900 | 122.0520020 | - | 0.3950 | 299 | ilvA | BSU21770 | 0.8724481463 |
200 nt | 791156 | 791355 | reverse | BSU07240 | yetN | -207 | -70.84 | - | 0.5850 | 123.2480011 | - | 0.2900 | 1099 | yetL | BSU07220 | 0.8711011410 |
200 nt | 494742 | 494941 | reverse | BSU04430 | ydbD | -899 | -52.90 | - | 0.4250 | 125.0230026 | - | 0.4350 | 1399 | ydaT | BSU04380 | 0.8695754409 |
200 nt | 1355092 | 1355291 | reverse | BSU12900 | htrA | -2745 | -71.91 | - | 0.5400 | 121.2139969 | - | 0.3050 | 2499 | ykbA | BSU12860 | 0.8692007065 |
200 nt | 737924 | 738123 | reverse | BSU06740 | yefB | -972 | -70.30 | - | 0.5400 | 121.8629990 | - | 0.3150 | 5199 | yerO | BSU06700 | 0.8691427112 |
200 nt | 937998 | 938197 | reverse | BSU08700 | ygaE | -3071 | -54.20 | - | 0.4350 | 124.7170029 | - | 0.4200 | 1099 | yfhS | BSU08640 | 0.8665797114 |
200 nt | 3421066 | 3421265 | reverse | BSU33340 | sspJ | -300 | -64.50 | - | 0.4850 | 122.1780014 | - | 0.3150 | 99 | lysP | BSU33330 | 0.8648849726 |
200 nt | 2739937 | 2740136 | reverse | BSU26830 | yrpE | -1321 | -49.69 | - | 0.4200 | 125.9660034 | - | 0.3800 | 3499 | aadK | BSU26790 | 0.8648592830 |
200 nt | 1097850 | 1098049 | reverse | BSU10230 | yhfH | -171 | -36.90 | - | 0.2550 | 125.4639969 | - | 0.4450 | 99 | gltT | BSU10220 | 0.8626419306 |
200 nt | 3851617 | 3851816 | reverse | BSU37520 | ywhD | -470 | -68.42 | - | 0.5500 | 122.7009964 | - | 0.3000 | 2099 | speE | BSU37500 | 0.8624630570 |
200 nt | 2724828 | 2725027 | reverse | BSU26660 | yrdN | -187 | -37.44 | - | 0.2200 | 124.0479965 | - | 0.3800 | 99 | czcD | BSU26650 | 0.8623370528 |
200 nt | 1204503 | 1204702 | reverse | BSU11270 | yjzD | -129 | -59.84 | - | 0.5050 | 124.6380005 | - | 0.3600 | 13299 | yitU | BSU11140 | 0.8622197509 |
200 nt | 2692345 | 2692544 | reverse | BSU26240 | yqaO | -201 | -47.40 | - | 0.3350 | 123.8980026 | - | 0.4100 | 999 | yqaQ | BSU26220 | 0.8618891239 |
200 nt | 3108926 | 3109125 | reverse | BSU30370 | bceB | -372 | -32.52 | - | 0.3250 | 129.4949951 | - | 0.5250 | 599 | yttB | BSU30350 | 0.8596788645 |
200 nt | 1493525 | 1493724 | reverse | BSU14250 | yknT | -779 | -39.60 | - | 0.2150 | 122.8750000 | - | 0.4750 | 1599 | ykuT | BSU14210 | 0.8589127660 |
200 nt | 2111609 | 2111808 | reverse | BSU19380 | yojO | -129 | -37.20 | - | 0.2700 | 125.5370026 | - | 0.4050 | 99 | sucA | BSU19370 | 0.8542534709 |
200 nt | 1678852 | 1679051 | reverse | BSU17060 | ymzD | -101667 | -62.81 | - | 0.4750 | 122.0299988 | - | 0.3300 | 7299 | ylqB | BSU15960 | 0.8517054319 |
200 nt | 4109617 | 4109816 | reverse | BSU40030 | yxaB | -1233 | -52.14 | - | 0.3400 | 121.7229996 | - | 0.3900 | 99 | yxaD | BSU40010 | 0.8503260016 |
200 nt | 3373849 | 3374048 | reverse | BSU32890 | yusQ | -2669 | -56.90 | - | 0.5000 | 125.1539993 | - | 0.3500 | 299 | fadM | BSU32850 | 0.8485122919 |
200 nt | 1886780 | 1886979 | reverse | BSU17590 | xylR | -3633 | -42.30 | - | 0.3150 | 124.7409973 | - | 0.3500 | 13299 | cwlC | BSU17410 | 0.8470579386 |
200 nt | 3153718 | 3153917 | reverse | BSU30850 | ytdA | -918 | -51.80 | - | 0.3600 | 122.3779984 | - | 0.3500 | 99 | menF | BSU30830 | 0.8457853198 |
200 nt | 984466 | 984665 | reverse | BSU09120 | yhcK | -1169 | -40.11 | - | 0.2800 | 124.3939972 | - | 0.3750 | 99 | cspB | BSU09100 | 0.8457109332 |
200 nt | 3464551 | 3464750 | reverse | BSU33780 | sdpI | -1784 | -40.60 | - | 0.3100 | 125.1740036 | - | 0.4450 | 1399 | opuBA | BSU33730 | 0.8446103930 |
200 nt | 3684271 | 3684470 | reverse | BSU35780 | lytD | -456 | -43.90 | - | 0.3450 | 125.0149994 | - | 0.3500 | 3399 | tagD | BSU35740 | 0.8443253636 |
200 nt | 2770775 | 2770974 | reverse | BSU27160 | cypB | -3016 | -41.20 | - | 0.3550 | 126.4410019 | - | 0.4050 | 2199 | yrhP | BSU27100 | 0.8441781402 |
200 nt | 1666288 | 1666487 | reverse | BSU15960 | ylqB | -4779 | -56.60 | - | 0.4500 | 123.3949966 | - | 0.3650 | 10599 | rpmB | BSU15820 | 0.8431691527 |
200 nt | 2343862 | 2344061 | reverse | BSU22330 | ypoC | -303 | -43.50 | - | 0.3800 | 126.2779999 | - | 0.4850 | 3199 | yppC | BSU22300 | 0.8418609500 |
200 nt | 3158854 | 3159053 | reverse | BSU30890 | ytxO | -305 | -56.71 | - | 0.4200 | 122.1419983 | - | 0.3650 | 3399 | ytdA | BSU30850 | 0.8375009298 |
200 nt | 4129648 | 4129847 | reverse | BSU40200 | yydD | -831 | -66.70 | - | 0.5050 | 120.9280014 | - | 0.3350 | 2099 | yydF | BSU40180 | 0.8359215260 |
200 nt | 4134175 | 4134374 | reverse | BSU40230 | yydA | -162 | -30.70 | - | 0.2450 | 126.6350021 | - | 0.3400 | 99 | yydB | BSU40220 | 0.8344783783 |
200 nt | 245362 | 245561 | reverse | BSU02340 | gltP | -8057 | -57.10 | - | 0.4500 | 122.8600006 | - | 0.3500 | 1799 | ybfI | BSU02220 | 0.8332447410 |
200 nt | 3996389 | 3996588 | reverse | BSU38970 | yxjF | -4051 | -40.50 | - | 0.3750 | 126.9710007 | - | 0.4250 | 4899 | yxkA | BSU38870 | 0.8313001394 |
200 nt | 2739837 | 2740036 | reverse | BSU26830 | yrpE | -1421 | -64.40 | - | 0.4950 | 121.3069992 | - | 0.3300 | 3399 | aadK | BSU26790 | 0.8294041157 |
200 nt | 1903178 | 1903377 | reverse | BSU17690 | yncM | -234 | -35.20 | - | 0.2700 | 125.4830017 | - | 0.4250 | 1899 | cotU | BSU17670 | 0.8289884329 |
200 nt | 933665 | 933864 | reverse | BSU08620 | yfhP | -693 | -62.04 | - | 0.4700 | 121.3809967 | - | 0.3750 | 5499 | sspK | BSU08550 | 0.8283531070 |
200 nt | 2054430 | 2054629 | reverse | BSU18840 | xynA | -70 | -52.10 | - | 0.3850 | 122.5159988 | - | 0.3450 | 599 | pps | BSU18830 | 0.8281581998 |
200 nt | 737824 | 738023 | reverse | BSU06740 | yefB | -1072 | -69.00 | - | 0.5350 | 120.7480011 | - | 0.3100 | 5099 | yerO | BSU06700 | 0.8277365565 |
200 nt | 198226 | 198425 | reverse | BSU01800 | alkA | -4222 | -30.81 | - | 0.3750 | 130.7449951 | - | 0.5150 | 4299 | ybbK | BSU01720 | 0.8267450333 |
200 nt | 3604668 | 3604867 | reverse | BSU35100 | yvlD | -1995 | -39.30 | - | 0.2750 | 123.9219971 | - | 0.3550 | 199 | yvmC | BSU35070 | 0.8267388940 |
200 nt | 3098465 | 3098664 | reverse | BSU30310 | ytwF | -3637 | -48.30 | - | 0.3850 | 123.9609985 | - | 0.4100 | 1999 | ytaP | BSU30250 | 0.8252500296 |
200 nt | 419514 | 419713 | reverse | BSU03690 | yczF | -150 | -54.00 | - | 0.4400 | 123.4860001 | - | 0.3300 | 1899 | dtpT | BSU03670 | 0.8242135644 |
200 nt | 2221888 | 2222087 | reverse | BSU21080 | yonI | -6769 | -36.60 | - | 0.3550 | 127.6279984 | - | 0.3150 | 599 | yonR | BSU21020 | 0.8236665726 |
200 nt | 2434023 | 2434222 | reverse | BSU23340 | ypuB | -21 | -56.65 | - | 0.4750 | 123.5520020 | - | 0.3050 | 599 | ypzJ | BSU23328 | 0.8226841688 |
200 nt | 3241980 | 3242179 | reverse | BSU31590 | yufS | -4073 | -57.60 | - | 0.4600 | 122.6460037 | - | 0.3500 | 5099 | yufK | BSU31510 | 0.8222519755 |
200 nt | 1700752 | 1700951 | reverse | BSU17060 | ymzD | -79767 | -52.70 | - | 0.4300 | 123.5100021 | - | 0.3150 | 29199 | ylqB | BSU15960 | 0.8189544678 |
200 nt | 2709820 | 2710019 | reverse | BSU26490 | yrkJ | -83 | -48.40 | - | 0.3600 | 122.8440018 | - | 0.3550 | 499 | yrkK | BSU26480 | 0.8178487420 |
200 nt | 153939 | 154138 | reverse | BSU01550 | gerD | -4477 | -50.70 | - | 0.4100 | 123.6019974 | - | 0.3700 | 108899 | abrB | BSU00370 | 0.8176639676 |
200 nt | 3239080 | 3239279 | reverse | BSU31590 | yufS | -6973 | -58.30 | - | 0.4150 | 120.6800003 | - | 0.3750 | 2199 | yufK | BSU31510 | 0.8171101809 |
200 nt | 3467327 | 3467526 | reverse | BSU33800 | opuCD | -120 | -32.10 | - | 0.2350 | 125.1719971 | - | 0.3550 | 99 | sdpR | BSU33790 | 0.8168275952 |
200 nt | 543114 | 543313 | reverse | BSU05000 | yddK | -2953 | -43.99 | - | 0.3600 | 124.5599976 | - | 0.4700 | 11699 | immR | BSU04820 | 0.8156080246 |
200 nt | 3108826 | 3109025 | reverse | BSU30370 | bceB | -472 | -37.52 | - | 0.3400 | 126.4919968 | - | 0.4900 | 499 | yttB | BSU30350 | 0.8153505921 |
200 nt | 3334388 | 3334587 | reverse | BSU32470 | pucE | -1264 | -54.50 | - | 0.4850 | 124.4670029 | - | 0.3050 | 5899 | pucH | BSU32410 | 0.8130649924 |
200 nt | 3684371 | 3684570 | reverse | BSU35780 | lytD | -356 | -42.00 | - | 0.3250 | 124.1009979 | - | 0.3650 | 3499 | tagD | BSU35740 | 0.8130072355 |
200 nt | 881307 | 881506 | reverse | BSU08120 | yfjF | -4438 | -52.36 | - | 0.4850 | 125.3059998 | - | 0.3900 | 9099 | yfjQ | BSU08000 | 0.8121696115 |
200 nt | 2926798 | 2926997 | reverse | BSU28630 | pheT | -111 | -60.46 | - | 0.4950 | 122.2929993 | - | 0.3200 | 999 | yshA | BSU28610 | 0.8096395731 |
200 nt | 4066309 | 4066508 | reverse | BSU39600 | yxeC | -199 | -55.60 | - | 0.4600 | 123.0559998 | - | 0.3600 | 899 | yxeF | BSU39570 | 0.8090547919 |
200 nt | 3688648 | 3688847 | reverse | BSU35830 | ywtG | -3786 | -49.93 | - | 0.3300 | 120.9260025 | - | 0.3550 | 199 | yvyI | BSU35790 | 0.8084035516 |
200 nt | 1668788 | 1668987 | reverse | BSU15960 | ylqB | -2279 | -51.60 | - | 0.4050 | 122.7809982 | - | 0.4150 | 13099 | rpmB | BSU15820 | 0.8080439568 |
200 nt | 3334288 | 3334487 | reverse | BSU32470 | pucE | -1364 | -62.06 | - | 0.4700 | 120.7320023 | - | 0.2950 | 5799 | pucH | BSU32410 | 0.8073683381 |
200 nt | 3723732 | 3723931 | reverse | BSU36170 | ywqL | -589 | -55.50 | - | 0.4550 | 122.8669968 | - | 0.3300 | 499 | ywqN | BSU36150 | 0.8070057034 |
200 nt | 899787 | 899986 | reverse | BSU08340 | padR | -9312 | -54.60 | - | 0.3900 | 121.0039978 | - | 0.3550 | 10199 | yfjA | BSU08170 | 0.8061554432 |
200 nt | 2813434 | 2813633 | reverse | BSU27540 | yrvM | -110 | -48.20 | - | 0.3850 | 123.3710022 | - | 0.4200 | 1399 | cymR | BSU27520 | 0.8043378592 |
200 nt | 3458216 | 3458415 | reverse | BSU33700 | opuBD | -1491 | -44.09 | - | 0.3500 | 123.8420029 | - | 0.4200 | 1799 | yvzC | BSU33650 | 0.8041363358 |
200 nt | 3918262 | 3918461 | reverse | BSU38190 | galT | -732 | -37.50 | - | 0.2900 | 124.4739990 | - | 0.3100 | 99 | qoxA | BSU38170 | 0.8040998578 |
200 nt | 2576788 | 2576987 | reverse | BSU24950 | pstBB | -323 | -53.30 | - | 0.3700 | 120.7910004 | - | 0.4100 | 699 | yqgL | BSU24920 | 0.8040402532 |
200 nt | 2316211 | 2316410 | reverse | BSU22040 | ypbQ | -136 | -50.40 | - | 0.3350 | 120.7730026 | - | 0.3850 | 199 | ypbR | BSU22030 | 0.8038558364 |
200 nt | 2249344 | 2249543 | reverse | BSU21440 | bdbB | -15782 | -43.38 | - | 0.3500 | 124.1179962 | - | 0.4650 | 1899 | youB | BSU21329 | 0.8037469983 |
200 nt | 2333112 | 2333311 | reverse | BSU22210 | yprB | -113 | -43.21 | - | 0.3300 | 123.4840012 | - | 0.4200 | 199 | cotD | BSU22200 | 0.8028732538 |
200 nt | 2116670 | 2116869 | reverse | BSU19420 | yojK | -282 | -43.45 | - | 0.3300 | 123.3679962 | - | 0.3150 | 99 | cwlS | BSU19410 | 0.8022140265 |
200 nt | 3941242 | 3941441 | reverse | BSU38430 | gspA | -3219 | -42.84 | - | 0.4300 | 126.9950027 | - | 0.4600 | 1699 | ywbA | BSU38390 | 0.8019362092 |
200 nt | 1248722 | 1248921 | reverse | BSU11740 | cotZ | -621 | -64.39 | - | 0.5300 | 121.6650009 | - | 0.3550 | 8699 | yjbP | BSU11630 | 0.8019282818 |
200 nt | 3014345 | 3014544 | reverse | BSU29460 | moaB | -70 | -39.90 | - | 0.2550 | 122.2269974 | - | 0.3300 | 99 | argG | BSU29450 | 0.8009542227 |
200 nt | 2542225 | 2542424 | reverse | BSU24510 | yqhO | -115 | -57.14 | - | 0.4800 | 122.8730011 | - | 0.4100 | 1499 | yqhR | BSU24480 | 0.8008475304 |
200 nt | 2096086 | 2096285 | reverse | BSU19230 | yocJ | -165 | -39.50 | - | 0.2800 | 123.2190018 | - | 0.4150 | 399 | yocI | BSU19220 | 0.8003621101 |
200 nt | 4107928 | 4108127 | reverse | BSU40010 | yxaD | -1158 | -51.01 | - | 0.4150 | 123.1330032 | - | 0.3800 | 99 | yxaF | BSU39990 | 0.8002312183 |
200 nt | 2659771 | 2659970 | reverse | BSU25880 | yqxJ | -3681 | -49.60 | - | 0.3800 | 122.5149994 | - | 0.3600 | 1099 | yqcI | BSU25820 | 0.8001416922 |