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Figure 1 | BMC Bioinformatics

Figure 1

From: Predicted protein-protein interactions in the moss Physcomitrella patens: a new bioinformatic resource

Figure 1

A flow-chart can be used to visualize the process of generating the predicted interactome. The predicted interactome of Physcomitrella patens was derived from orthologs of Arabidopsis, nematode, fruitfly, bacteria, mouse, rat, human and yeast using the InParanoid algorithm (See Methods). One to one orthology was used to query a MySQL database containing interaction data from BioGrid, BIND, DIP and Intact databases. A spreadsheet of orthologous interactions and their supporting information was generated and input into Cytoscape for the predicted interactome visualization.

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BMC Bioinformatics

ISSN: 1471-2105

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