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Table 2 Gene sets analyzed

From: Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective

Abbrev Description or KEGG pathway Total # of CpGs
27K (all) 27K (auto) 450K (pass)
  Total CpGs included in analyses 27578 26,486 319,264
DMR 500 previously published leukocyte DMRs [27K] [18] or overlap with 600 previously published leukocyte DMRs [450K] [46] 500 500 417
PcG Polycomb targets compiled from four sources [48-51] 3614 3523 41,942
Apoptosis 04210 Apoptosis 157 149 1126
Bcell 04662 B cell receptor signaling pathway 138 136 1168
CardiacM 04260 Cardiac muscle contraction 121 116 967
CellCycle 04110 Cell cycle 250 245 2028
CyCy 04060 Cytokine-cytokine receptor interaction 437 426 2088
DorsoV 04320 Dorso-ventral axis formation 38 38 565
ErbB 04012 ErbB signaling pathway 154 148 1470
Hemato 04640 Hematopoietic cell lineage 153 152 779
HepC 05160 Hepatitis C 209 205 1536
Hhog 04340 Hedgehog signaling pathway 92 90 1090
JakStat 04630 Jak-STAT signaling pathway 254 250 1579
MAPK 04010 MAPK signaling pathway 469 457 4535
mTOR 04150 mTOR signaling pathway 92 88 1117
NK 04650 Natural killer cell mediated cytotoxicity 219 215 1530
Notch 04330 Notch signaling pathway 67 67 1097
p53 04115 p53 signaling pathway 144 142 1034
Tcell 04660 T cell receptor signaling pathway 191 187 1568
TGF 04350 TGF-beta signaling pathway 154 154 1314
VascSm 04270 Vascular smooth muscle contraction 193 189 1903
VEGF 04370 VEGF signaling pathway 131 131 1104