Table 1 Significance of differences between balanced accuracies for public and commercial motif scanners
From: Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data
Motif database | Hypothesis tested | P-value for | |
|---|---|---|---|
| Â | Â | negative dataset: | |
|  |  | Exon 3 | Peaks’ flanks |
Transfac | match vs matrix-scan | 5.04e-41 | 1.13e-15 |
| Â | match vs Bio.Motif | 3.37e-32 | 1.44e-12 |
MatBase | MatInspector vs matrix-scan | 3.98e-83 | 9.88e-43 |
| Â | MatInspector vs Bio.Motif | 3.50e-67 | 8.74e-36 |
MatBase – families | MatInspector vs matrix-scan | 0.00011 | 0.00565 |
| Â | MatInspector vs Bio.Motif | 0.01066 | 0.03784 |