Table 4 Rabema benchmark results (normalized found interval) for 1 million 101 bp real reads of arabidopsis thaliana
From: BitMapper: an efficient all-mapper based on bit-vector computing
Mapper | Time | Benchmark category | Â | Â | Â | Â | Â | Â | Â | Â | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | [min:sec] | All[%] | All-best[%] | Any-best[%] | |||||||||
Masai | 3:05 | 99.96 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| Â | Â | Â | 99.97 | 99.96 | 99.25 | Â | 99.98 | 99.96 | 99.27 | Â | 99.98 | 99.96 | 99.53 |
Hobbes 2 | 1:52 | 99.92 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 |
| Â | Â | Â | 99.97 | 99.88 | 98.72 | Â | 99.98 | 99.99 | 99.64 | Â | 99.99 | 100.00 | 99.98 |
mrFAST | 2:30 | 99.88 | 100.00 | 100.00 | 100.00 | 99.98 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| Â | Â | Â | 99.99 | 99.99 | 97.94 | Â | 99.99 | 100.00 | 97.70 | Â | 100.00 | 100.00 | 98.50 |
RazerS 3 a | 8:30 | 99.88 | 100.00 | 100.00 | 100.00 | 99.98 | 100.00 | 100.00 | 100.00 | 99.99 | 100.00 | 100.00 | 100.00 |
| Â | Â | Â | 99.99 | 99.70 | 98.12 | Â | 99.98 | 99.70 | 98.63 | Â | 99.99 | 99.84 | 99.27 |
RazerS 3 | 9:06 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
| Â | Â | Â | 100.00 | 100.00 | 100.00 | Â | 100.00 | 100.00 | 100.00 | Â | 100.00 | 100.00 | 100.00 |
Yara | 1:25 | — | — | — | — | — | — | — | — | — | — | — | — |
|  |  |  | — | — | — |  | — | — | — |  | — | — | — |
BitMapper | 0:32 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 | 99.99 | 100.00 | 100.00 | 99.99 |
| Â | Â | Â | 99.98 | 100.00 | 99.99 | Â | 99.99 | 100.00 | 99.99 | Â | 99.99 | 100.00 | 99.99 |