Table 5 Results for mapping 10 million 100 bp and 151 bp single-end reads against human genome
From: BitMapper: an efficient all-mapper based on bit-vector computing
| Â | 100 bp reads | Â | Â | 151 bp reads | Â | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mapper | Time[min:sec] | Peak | Mapping | Mapped | Â | Time [min:sec] | Peak | Mapping | Mapped | Â | ||
| Â | 1 thr | 8 thr | memory | sites[million] | reads[%] | Â | 1 thr | 8 thr | memory | sites[million] | reads[%] | Â |
Masai | 361:35 | — | 20.1GB | 1371.18 | 92.2736 |  | 602:06 | — | 21.3GB | 939.89 | 93.8483 |  |
Hobbes 2 | 587:04 | 135:10 | 14.0GB | 1368.86 | 92.2767 | Â | 694:53 | 151:52 | 14.5GB | 936.42 | 93.8481 | Â |
mrFAST | 921:46 | — | 4.9GB | 1374.76 | 92.2572 |  | 795:59 | — | 6.5GB | 939.48 | 93.7376 |  |
RazerS 3 a | — | — | >24GB | — | — |  | — | — | >24GB | — | — |  |
RazerS 3 | — | — | >24GB | — | — |  | — | — | >24GB | — | — |  |
Yara | 278:09 | 78:10 | 9.0GB | 1367.42 | 92.2658 | Â | 389:56 | 93:15 | 9.3GB | 939.44 | 93.8480 | Â |
BitMapper | 158:57 | 32:59 | 17.9GB | 1375.68 | 92.2771 | Â | 135:06 | 27:56 | 19.2GB | 940.16 | 93.8487 | Â |