Table 6 Results for mapping 10 million 100 bp single-end reads against caenorhabditis elegans and arabidopsis thaliana
From: BitMapper: an efficient all-mapper based on bit-vector computing
| Â | Caenorhabditis elegans | Â | Â | Arabidopsis thaliana | Â | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mapper | Time [min:sec] | Peak | Mapping | Mapped | Â | Time [min:sec] | Peak | Mapping | Mapped | Â | ||
| Â | 1 thr | 8 thr | memory | sites[million] | reads[%] | Â | 1 thr | 8 thr | memory | sites[million] | reads[%] | Â |
Masai | 22:28 | — | 3.2GB | 54.61 | 90.4140 |  | 21:06 | — | 3.3GB | 57.83 | 98.2578 |  |
Hobbes 2 | 16:51 | 4:42 | 0.9GB | 55.40 | 90.4150 | Â | 16:05 | 3:42 | 1.0GB | 57.76 | 98.2616 | Â |
mrFAST | 35:15 | — | 4.2GB | 55.60 | 90.4119 |  | 23:12 | — | 4.3GB | 57.94 | 98.2609 |  |
RazerS 3 a | 69:24 | 59:39 | 12.0GB | 55.24 | 90.4118 | Â | 86:39 | 72:31 | 10.3GB | 57.49 | 98.2551 | Â |
RazerS 3 | 75:27 | 61:40 | 12.6GB | 55.61 | 90.4154 | Â | 89:31 | 75:26 | 10.4GB | 57.96 | 98.2622 | Â |
Yara | 13:42 | 3:37 | 1.1GB | 54.65 | 90.4150 | Â | 15:13 | 4:01 | 1.2GB | 57.87 | 98.2608 | Â |
BitMapper | 5:08 | 1:25 | 4.5GB | 55.63 | 90.4159 | Â | 5:24 | 1:30 | 4.5GB | 57.94 | 98.2631 | Â |