Skip to main content

Table 2 Examples of the confirmed novel repeats found by Red in the genome of the Homo sapiens (hg38)

From: Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale

Location

Copy number

Length

Sequence

chr1:242110361–242110392

56058

31

ACATTCAAGTGATTCTCCTGCCTCAGCCTCA

chr2:119996761–119996800

51817

39

TCAATTGGCCGGGTGCGGTGGCTCACACCTGTAATCCCA

chr9:61982576–61982619

2292

43

TTGGGATTTCAGGCGTGAGCCACTGTGCCTGGCCAGCATTGCT

chrX:129964870–129964913

1344

43

TGTGTGTGGGTCTGTGTGTGAGAGAGAGAAAGAGAGAAACATG

chr16:55969556–55969604

1327

48

GTACATATATATACGTGTGTGTGTGTGTGTGTGTATATATATAAATTA

chr19:20397318–20397528

324

210

GCTTTGTTACAGTATTGGTTTCTGTCCACTATGAATTCTCTTATGTTTAT

   

TGAAGTCTGAGGACCAGTTAAAAGCTTTGCCACATTCTTCACATTTGCAA

   

GGTTTCTCTCCAGTATGAATTGTCTTATATTCACTTAGAGTTGAGGATGC

   

AGTAAAGGCTTTGCCACATTCTTCACATTTGTAAGGTTTCTCTCCAGTAT

   

GAGTTCTCCT

chr10:38932814–38933047

73

233

ACTAGGGTAGGTAATTTCATCTCAGTCTTATGCAGGTACCTTTTCTCAGG

   

ATCTCAGGAATGCAGACTTCTCACACTTCTGTTCTTTTCCTGGCTGTGTT

   

GGTGAGCTCAGTGATATTCCTCCATCACCTTCAAGAGCAGTTTTGTTTTG

   

TTTTTCCTGTTTTCATACTCCCAGCATCAGGAGTGTTCTAGGTGTGTCAG

   

TTTTTGTTACCTTCCCCTACATATTAAGTGGAA

chr18:79830653–79831758

15a

1105

TTCCCTGCGGACAGAGCCTTTGTCAGGAGGGTTCCCTGCAGACAGAGCCT

   

TCGTCAGGAGGGTTCCCTGCAGACAGAGCCTTCGTCAGGAGGGTTCCCTG

   

CGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAG

   

GAGGGTTCCCTGCATACAGAGCCTTCGTCAGGAGCGTTCTCTGCGGACAG

   

AGCCTTCGTCAGGAGGGTTCCCTGCATACAGAGCCTTCGTCAGGAGGGTT

   

CCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTC

   

GTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCG

   

GACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGA

   

GGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAG

   

CCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCC

   

CTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGT

   

CAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGA

   

CAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGG

   

GTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCC

   

TTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCT

   

GCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCA

   

GGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACA

   

GAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGGAGCGT

   

GCCCTGCGTACAGAGCCTTCGTCAGGAGCGTGCCCTGCGTACAGAGCCTT

   

CGTCAGGAGCGTGCCCTGCGTACAGAGCCTTCGTCAGGAGCGTGCCCTGC

   

GGACAGAGCCTTCGTCAGGAGGGTTCCCTGCGGACAGAGCCTTCGTCAGG

   

AGGGTTCCCTGCGGACAGAGCCTTCATCAGGAGGGTTCCCTGCGGACAGA

   

GCCTT

  1. The sequence chr18:79830653–79831758 has 15 overlapping copies, marked by ‘a’
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us