Table 2 Output produced by Hybroscale applied to phylogenetic trees belonging to a grass (Poaceae) dataset. Each runtime given in this table is stated in seconds. A missing result for a certain tree set means that our software Hybroscale could not compute the exact hybridization number (resp. set of representative networks) within 20 minutes
From: Computing all hybridization networks for multiple binary phylogenetic input trees
Computing HNumbers | Computing HNetworks | ||||
|---|---|---|---|---|---|
Genes | #Taxa | HNumber | Runtime | #HNetworks | Runtime |
ndhf its | 46 | 17 | 3.262 | - | - |
ndhf phyB | 40 | 8 | 0.199 | 2079 | 33.035 |
ndhf rbcl | 36 | 8 | 0.175 | 1488 | 32.1 |
ndhf rpoc | 34 | 9 | 0.197 | 264 | 5.353 |
ndhf waxy | 19 | 6 | 0.179 | 599 | 5.693 |
phyB its | 30 | 8 | 0.238 | 195 | 8.304 |
phyB rbcl | 21 | 4 | 0.083 | 6 | 1.65 |
phyB rpoc | 21 | 4 | 0.091 | 9 | 1.678 |
phyB waxy | 14 | 3 | 0.071 | 10 | 1.615 |
rbcl its | 29 | 12 | 4.41 | - | - |
rbcl rpoc | 26 | 7 | 0.147 | 111 | 3.836 |
rbcl waxy | 12 | 4 | 0.126 | 84 | 4.338 |
rpoc its | 31 | 12 | 4.5 | 3480 | 217.575 |
rpoc waxy | 10 | 2 | 0.07 | 1 | 1.582 |
waxy its | 15 | 5 | 0.118 | 15 | 2.712 |
ndhf phyB its | 30 | 13 | 243.411 | - | - |
ndhf phyB rbcl | 21 | 9 | 7.226 | - | - |
ndhf phyB rpoc | 21 | 8 | 6.189 | 36948 | 206.114 |
ndhf phyB waxy | 14 | 4 | 1.599 | 54 | 2.87 |
ndhf rbcl its | 28 | - | - | - | - |
ndhf rbcl rpoc | 26 | 11 | 7.223 | 46946 | 511.296 |
ndhf rbcl waxy | 12 | 5 | 4.198 | 114 | 5.577 |
ndhf rpoc its | 31 | - | - | - | - |
ndhf rpoc waxy | 10 | 3 | 2.583 | 14 | 2.632 |
ndhf waxy its | 15 | 8 | 4.213 | 6490 | 26.697 |
phyB rbcl its | 17 | 8 | 9.437 | 8661 | 233.768 |
phyB rbcl rpoc | 15 | 6 | 4.652 | 40 | 4.867 |
phyB rbcl waxy | 7 | 2 | 2.568 | 11 | 2.592 |
phyB rpoc its | 19 | 7 | 3.774 | 57 | 4.633 |
phyB rpoc waxy | 5 | 0 | 0.045 | 1 | 0.075 |
phyB waxy its | 10 | 4 | 3.122 | 204 | 3.844 |
rbcl rpoc its | 24 | - | - | - | - |
rbcl rpoc waxy | 9 | 3 | 1.585 | 5 | 1.62 |
rbcl waxy its | 11 | 6 | 6.224 | 63 | 7.49 |
rpoc waxy its | 10 | 4 | 2.626 | 4 | 2.635 |
ndhf phyB rbcl its | 17 | - | - | - | - |
ndhf phyB rbcl rpoc | 15 | 9 | 224.934 | 1517 | 403.728 |
ndhf phyB rbcl waxy | 7 | 2 | 2.581 | 1 | 2.594 |
ndhf phyB rpoc its | 19 | 9 | 984.937 | - | - |
ndhf phyB rpoc waxy | 5 | 0 | 0.056 | 1 | 0.071 |
ndhf phyB waxy its | 10 | 5 | 4.159 | 8016 | 26.434 |
ndhf rbcl rpoc its | 24 | - | - | - | - |
ndhf rbcl rpoc waxy | 9 | 4 | 3.165 | 396 | 14.864 |
ndhf rbcl waxy its | 11 | 6 | 54.399 | 2 | 159.99 |
ndhf rpoc waxy its | 10 | 5 | 4.213 | 324 | 16.663 |
phyB rbcl rpoc its | 14 | - | - | - | - |
phyB rbcl rpoc waxy | 4 | 0 | 0.057 | 1 | 0.06 |
phyB rbcl waxy its | 6 | 2 | 2.574 | 3 | 2.589 |
phyB rpoc waxy its | 5 | 0 | 0.064 | 1 | 0.065 |
rbcl rpoc waxy its | 9 | 5 | 7.205 | 333 | 38.471 |
ndhf phyB rbcl rpoc its | 14 | - | - | - | - |
ndhf phyB rbcl rpoc waxy | 4 | 0 | 0.066 | 1 | 0.084 |
ndhf phyB rbcl waxy its | 6 | 3 | 4.232 | 135 | 22.506 |
ndhf phyB rpoc waxy its | 5 | 0 | 0.059 | 1 | 0.083 |
ndhf rbcl rpoc waxy its | 9 | 5 | 35.899 | 235 | 587.54 |
phyB rbcl rpoc waxy its | 4 | 0 | 0.066 | 1 | 0.076 |
ndhf phyB rbcl rpoc waxy its | 4 | 0 | 0.062 | 1 | 0.083 |