|
Method
|
CDE
|
CCDE
|
CCEE
|
FNR
|
FPR
|
FDR
|
FNDR
|
|---|
|
twocri.(γ
0=0.4)
|
654.6(5.4)
|
460.9(2.3)
|
4306.3(5.2)
|
0.078(0.005)
|
0.043(0.001)
|
0.295(0.006)
|
0.009(0.000)
|
|
(γ
0=0.6)
|
490.0(3.9)
|
434.1(2.4)
|
4444.2(3.4)
|
0.132(0.005)
|
0.012(0.001)
|
0.114(0.006)
|
0.014(0.001)
|
|
(ζ=0.05)
|
415.7(5.0)
|
400.6(3.5)
|
4484.9(2.7)
|
0.199(0.007)
|
0.003(0.001)
|
0.036(0.006)
|
0.022(0.001)
|
|
edgeR 1(ζ=0.05)
|
420.0(8.6)
|
411.7(8.4)
|
4491.7(2.8)
|
0.177(0.017)
|
0.002(0.001)
|
0.020(0.001)
|
0.020(0.002)
|
|
edgeR 2(ζ=0.05)
|
399.4(10.2)
|
386.3(9.8)
|
4486.9(4.6)
|
0.227(0.020)
|
0.003(0.001)
|
0.033(0.011)
|
0.025(0.002)
|
|
DESeq(ζ=0.05)
|
443.6(15.9)
|
409.3(15.1)
|
4465.8(5.3)
|
0.181(0.030)
|
0.008(0.001)
|
0.077(0.011)
|
0.020(0.003)
|
|
BaySeq(ζ=0.05)
|
331.0(15.5)
|
327.0(14.9)
|
4496.0(2.2)
|
0.346(0.030)
|
0.001(0.000)
|
0.012(0.006)
|
0.037(0.003)
|
|
NBPSeq(ζ=0.05)
|
422.3(7.9)
|
412.7(7.9)
|
4490.4(3.1)
|
0.175(0.016)
|
0.002(0.001)
|
0.023(0.007)
|
0.019(0.002)
|
|
EBSeq(ζ=0.05)
|
332.9(14.0)
|
248.4(11.1)
|
4415.6(9.4)
|
0.503(0.022)
|
0.019(0.002)
|
0.253(0.023)
|
0.054(0.002)
|
|
NOISeq(ζ=0.05)
|
196.8(11.0)
|
191.4(10.8)
|
4494.6(2.5)
|
0.617(0.022)
|
0.001(0.001)
|
0.028(0.013)
|
0.064(0.002)
|
|
SAMSeq(ζ=0.05)
|
274.3(15.7)
|
212.1(7.7)
|
4437.8(10.9)
|
0.576(0.015)
|
0.014(0.002)
|
0.226(0.029)
|
0.061(0.001)
|
|
TSPM(ζ=0.05)
|
129.9(10.5)
|
80.1 (8.9)
|
4450.2(7.1)
|
0.840(0.018)
|
0.011(0.002)
|
0.383(0.046)
|
0.086(0.002)
|
-
#Empirical estimates of the standard deviation were reported in the parentheses
- edgeR 1 estimates common dispersion parameter for all tags; edgeR 2 estimats tag-wise dispersion parameters
-
ζdenotes the false discovery rate
