Skip to main content
Fig. 4 | BMC Bioinformatics

Fig. 4

From: InteMAP: Integrated metagenomic assembly pipeline for NGS short reads

Fig. 4

The error profile of InteMAP assembly on the sim-113sp dataset. a The Error counts for each species from the InteMAP assembly on the sim-113sp dataset are shown. The lateral axis shows the coverage of the species. b The square dot with solid line reflects the average error rate within the subsets of contigs with different intervals of length which were generated as follows. We sorted the contigs by the descending order of length and partitioned the set of ordered contigs into subsets so that the aggregated length of contigs in each subset equaled to or approximated to 5 % of the total length. The error rate is measured as the average distance between errors on each subset of the contigs. The error rate (left vertical axis) is plotted versus the quantile of the total length (lateral axis) at which the set of contigs are partitioned. The circle dot with dash line draws N-len size (right vertical axis) at the aggregate length points (percentage of the total length is shown on lateral axis)

Back to article page