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Table 1 List of the genes included in leBIBIQBPP

From: leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

  Prokaryotes RNA/Protein Stringency Nb of sequences
SSU rDNA lax Archaea+Bacteria RNA All sequences 1,309,339
SSU rDNA stringent Archaea+Bacteria RNA Valid names 234,263
SSU rDNA TS stringent Archaea+Bacteria RNA TS sequences 21,451
SSU rDNA superstringent Archaea+Bacteria RNA 1 TS/species 11,289
SSU rDNA genus-level Archaea+Bacteria RNA 1 TS/genus 2291
LSU rDNA lax Archaea+Bacteria RNA All sequences 19,357
LSU rDNA stringent Archaea+Bacteria RNA Valid names 9735
LSU rDNA TS-stringent Archaea+Bacteria RNA TS/species 2031
tmRNA lax Bacteria RNA All sequences 1273
tmrNA stringent Bacteria RNA Valid names 1044
rpoB lax Bacteria Protein All sequences 29,101
rpoB stringent Bacteria Protein Valid names 20,062
dnaJ+dnak lax Bacteria Protein All sequences 12,780
dnaJ+dnaK stringent Bacteria Protein Valid names 9606
fusA lax Bacteria Protein All sequences 4009
fusA stringent Bacteria Protein Valid names 3463
groEL lax Bacteria Protein All sequences 24,344
groEL stringent Bacteria Protein Valid names 11,845
groES lax Bacteria Protein All sequences 335
groES stringent Bacteria Protein Valid names 277
glyA lax Bacteria Protein All sequences 3155
glyA stringent Bacteria Protein Valid names 2732
gyrB lax Bacteria Protein All sequences 30,537
gyrB stringent Bacteria Protein Valid names 23,803
recA lax Bacteria Protein All sequences 25,616
recA stringent Bacteria Protein Valid names 16,526
sodA lax Bacteria Protein All sequences 3975
sodA stringent Bacteria Protein Valid names 3736
tuf lax Bacteria Protein All sequences 7930
tuf stringent Bacteria Protein Valid names 6756
groEL2 lax Actinobacteria Protein All sequences 2942
groEL2 stringent Actinobacteria Protein Valid names 2086
groEL2 TS-stringent Actinobacteria Protein TS sequences 521