Table 1 List of the genes included in leBIBIQBPP
Prokaryotes | RNA/Protein | Stringency | Nb of sequences | |
|---|---|---|---|---|
SSU rDNA lax | Archaea+Bacteria | RNA | All sequences | 1,309,339 |
SSU rDNA stringent | Archaea+Bacteria | RNA | Valid names | 234,263 |
SSU rDNA TS stringent | Archaea+Bacteria | RNA | TS sequences | 21,451 |
SSU rDNA superstringent | Archaea+Bacteria | RNA | 1 TS/species | 11,289 |
SSU rDNA genus-level | Archaea+Bacteria | RNA | 1 TS/genus | 2291 |
LSU rDNA lax | Archaea+Bacteria | RNA | All sequences | 19,357 |
LSU rDNA stringent | Archaea+Bacteria | RNA | Valid names | 9735 |
LSU rDNA TS-stringent | Archaea+Bacteria | RNA | TS/species | 2031 |
tmRNA lax | Bacteria | RNA | All sequences | 1273 |
tmrNA stringent | Bacteria | RNA | Valid names | 1044 |
rpoB lax | Bacteria | Protein | All sequences | 29,101 |
rpoB stringent | Bacteria | Protein | Valid names | 20,062 |
dnaJ+dnak lax | Bacteria | Protein | All sequences | 12,780 |
dnaJ+dnaK stringent | Bacteria | Protein | Valid names | 9606 |
fusA lax | Bacteria | Protein | All sequences | 4009 |
fusA stringent | Bacteria | Protein | Valid names | 3463 |
groEL lax | Bacteria | Protein | All sequences | 24,344 |
groEL stringent | Bacteria | Protein | Valid names | 11,845 |
groES lax | Bacteria | Protein | All sequences | 335 |
groES stringent | Bacteria | Protein | Valid names | 277 |
glyA lax | Bacteria | Protein | All sequences | 3155 |
glyA stringent | Bacteria | Protein | Valid names | 2732 |
gyrB lax | Bacteria | Protein | All sequences | 30,537 |
gyrB stringent | Bacteria | Protein | Valid names | 23,803 |
recA lax | Bacteria | Protein | All sequences | 25,616 |
recA stringent | Bacteria | Protein | Valid names | 16,526 |
sodA lax | Bacteria | Protein | All sequences | 3975 |
sodA stringent | Bacteria | Protein | Valid names | 3736 |
tuf lax | Bacteria | Protein | All sequences | 7930 |
tuf stringent | Bacteria | Protein | Valid names | 6756 |
groEL2 lax | Actinobacteria | Protein | All sequences | 2942 |
groEL2 stringent | Actinobacteria | Protein | Valid names | 2086 |
groEL2 TS-stringent | Actinobacteria | Protein | TS sequences | 521 |