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Fig. 5 | BMC Bioinformatics

Fig. 5

From: EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering

Fig. 5

Comparison of running time and memory usage with respect to library size. a CPU time and (b) maximum memory usage for single-end data, (c) CPU time and (d) maximum memory usage for paired-end data, measured on a machine with Intel Xeon 2.90 GHz CPUs. EMSAR, RSEM and Cufflinks were run with 4 slots for shorter run time; EMSAR was also run without multi-threading for the single-end case. IsoEM did not provide a parallelization option. Alignment process is not included in the comparison

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BMC Bioinformatics

ISSN: 1471-2105

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