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Table 4 Numbers of true positive predictions made by dRW, dRW-kNN, ITSS, PILL and Naive from an older GOA file (date: 2010-01-20) to a recent GOA file (date: 2014-06-09) of Yeast and Human. The data in the parentheses are the corresponding true positive rate for each of the methods. TPR means the true path rule is applied to append the ancestor functions of the positive predictions, and NoTPR means the true path rule is not applied

From: Predicting protein function via downward random walks on a gene ontology

   dRW dRW-kNN ITSS PILL Naive
Yeast NoTPR 6(6.00 %) 17(17.00 %) 6(6.00 %) 0(0.00 %) 31(31.00 %)
  TPR 34(6.58 %) 17(17.00 %) 6(6.00 %) 11(1.83 %) 31(31.00 %)
Human NoTPR 10(10.00 %) 27(27.00 %) 20(20.00 %) 19(19.00 %) 48(48.00 %)
  TPR 120(17.36 %) 27(27.00 %) 20(20.00 %) 80(21.45 %) 48(48.00 %)