Table 2 Results from the X!Tandem and PeptideProphet optimization of the six test datasets with information on execution times and the total time for the optimization
From: Scientific workflow optimization for improved peptide and protein identification
Dataset | Runtime (def.) | Runtime (opt.) | Runtime (max) | Optimization time |
|---|---|---|---|---|
E. coli (ion trap) | 00:01:17 | 00:07:11 | 00:34:03 | 04:58:32 |
E. coli (TOF) | 00:06:42 | 00:09:56 | 00:14:03 | 04:07:15 |
E. coli (orbitrap) | 00:08:08 | 00:08:30 | 00:09:45 | 03:09:40 |
H. sapiens (ion trap) | 00:19:34 | 03:06:00 | 09:17:00 | 29:45:13 |
H. sapiens (TOF) | 00:13:06 | 00:52:13 | 03:10:00 | 23:07:18 |
H. sapiens (orbitrap) | 00:04:22 | 00:09:05 | 02:40:54 | 12:36:58 |