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Table 2 Results from the X!Tandem and PeptideProphet optimization of the six test datasets with information on execution times and the total time for the optimization

From: Scientific workflow optimization for improved peptide and protein identification

Dataset Runtime (def.) Runtime (opt.) Runtime (max) Optimization time
E. coli (ion trap) 00:01:17 00:07:11 00:34:03 04:58:32
E. coli (TOF) 00:06:42 00:09:56 00:14:03 04:07:15
E. coli (orbitrap) 00:08:08 00:08:30 00:09:45 03:09:40
H. sapiens (ion trap) 00:19:34 03:06:00 09:17:00 29:45:13
H. sapiens (TOF) 00:13:06 00:52:13 03:10:00 23:07:18
H. sapiens (orbitrap) 00:04:22 00:09:05 02:40:54 12:36:58