Skip to main content

Table 3 Evaluation of the computational complexity. Mean CPU time in seconds of each reconstruction method on the different datasources in a 2 x Intel Xeon E5 2670 8C (2.6 GHz)

From: NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference

Datasource ARACNE C3NET CLR GeneNet Genie3 MRNET MutRank MRNETB PCIT Zscore
R1 2.483 2.367 0.409 9.377 1310.486 7.200 0.638 11.195 11.352 0.086
S1 0.106 0.215 0.059 0.917 183.266 0.120 0.056 0.406 0.333 0.010
S2 1.775 1.904 0.349 9.504 950.648 7.101 0.585 10.907 10.898 0.091
G1 10.442 6.795 1.079 29.612 2839.319 31.385 1.865 46.255 47.106 0.260
G2 25.551 12.189 1.750 53.792 4115.408 60.143 3.431 100.375 103.085 0.418