From: Survey statistics of automated segmentations applied to optical imaging of mammalian cells
Stage of pipeline | Measurement assurance strategy | Source of variability assessed/addressed | Reference |
---|---|---|---|
Sample Preparation | -Establish well-defined protocols for handling cells (ASTM F2998) | Cell culture variability (cell type, donor, passage, history, culturing protocol, user technique) | |
-Use stable and validated stains (e.g. photostable, chemically stable, high affinity, well characterized antibody reagents) | Instability of probe molecule and non-specific staining | ||
-Choose substrate with low and homogeneous background signal for selected imaging mode or probe (ASTM F2998) | Interference from background | ||
-Optimize medium [filter solutions to reduce particulates, reduce autofluorescence (phenol red, riboflavin, glutaraldehyde, avoid proteins/serum during imaging) | |||
-Optimize experimental design to the measurement (e.g., low seeding density if images of single cells are best) (ASTM F2998) | Interference from cells in contact | ||
Image Capture | -Use optical filters to assess limit of detection, saturation and linear dynamic range of image capture (ASTM F2998) | Instrument performance variability (e.g.) light source intensity fluctuations, camera performance, degradation of optical components, changes in focus) | |
-Optimize match of dyes, excitation/emission wavelength, optical filters & optical filters | Poor signal and noisy background | ||
-Minimize refractive index mismatch of objective, medium, coverslips & slides | |||
-Use highest resolution image capture that is practical (e.g., balance throughput with magnification, balance numerical aperture with desired image depth) | |||
-Calibrate pixel area to spatial area with a micrometer | Changes in magnification | ||
-Collect flat-field image to correct for illumination inhomogeneity (ASTM F2998) | Non-uniformity of intensity across the microscope field of view |